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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4472-RA through 18771 annotations produced 1 hits



Imaginal disc growth factor1 (Idgf1):

Annotation Number : CG4472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020416
Gbrowse : chr2L:16445279-16446847 (+) // 100.0 //
Probeset : 1633237_at
Accessions : protein= NP_477258;, nucleotide= NM_057910;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0020416.
Homophila reports that CG4472 is a close match (6e-27) to human gene ASRT7;CHI3L1;GP39;YKL40 (NP_001267), a gene associated with {Asthma-related traits, susceptibility to, 7}, 611960 (3);{Schizophrenia, susceptiblity to}, 181500 (3).
VDRC has 2 RNAi stocks for FBgn0020416 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 34 of 4 0.20Down
Head597 ± 114 of 4 4.20Up
Eye323 ± 704 of 4 2.27None
Thoracicoabdominal ganglion25 ± 24 of 4 0.20Down
Salivary gland75 ± 84 of 4 0.53Down
Crop358 ± 264 of 4 2.50Up
Midgut15 ± 10 of 4 0.10Down
Tubule401 ± 1404 of 4 2.80None
Hindgut699 ± 284 of 4 4.90Up
Heart1230 ± 924 of 4 8.63Up
Fat body1503 ± 1094 of 410.54Up
Ovary5 ± 10 of 4 0.00Down
Testis10 ± 10 of 4 0.10Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca1689 ± 234 of 411.84Up
Mated spermatheca1409 ± 574 of 4 9.88Up
Adult carcass696 ± 414 of 4 4.90Up
Larval CNS5 ± 40 of 4 0.04Down
Larval Salivary gland21 ± 21 of 4 0.15Down
Larval midgut4 ± 00 of 4 0.03Down
Larval tubule78 ± 274 of 4 0.60None
Larval hindgut254 ± 154 of 4 1.79Up
Larval fat body1300 ± 1274 of 4 9.10Up
Larval trachea46 ± 64 of 4 0.33Down
Larval carcass114 ± 154 of 4 0.80None
S2 cells (growing)1694 ± 44 of 411.88Up
Whole fly142 ± 44 of 4

Looking for CG4472-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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