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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4476-RB through 18771 annotations produced 1 hits



(CG4476):

Annotation Number : CG4476
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035969
Gbrowse : chr3L:9204983-9208369 (+) // 100.0 //
Probeset : 1628655_at
Accessions : protein= NP_648293;, nucleotide= NM_140036;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from ele
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0035969.
BDGP gene expression has embryonic in situ data for CG4476: 22 pix of staining in 8 body parts.
Homophila reports that CG4476 is a close match (4e-61) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
BioGrid reports that CG4476 interacts with CG5313 .
TRiP has 1 RNAi stocks for FBgn0035969 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035969 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 12 of 4 0.00Down
Head25 34 of 4 0.10Down
Eye41 44 of 4 0.19Down
Thoracicoabdominal ganglion4 20 of 4 0.00Down
Salivary gland4 10 of 4 0.02Down
Crop2 10 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule9 40 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart2 00 of 4 0.01Down
Fat body3 31 of 4 0.02Down
Ovary597 204 of 4 2.70Up
Testis27 34 of 4 0.10Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca8 11 of 4 0.04Down
Mated spermatheca3 10 of 4 0.02Down
Adult carcass10 31 of 4 0.00Down
Larval CNS154 184 of 4 0.69Down
Larval Salivary gland3 20 of 4 0.02Down
Larval midgut1 00 of 4 0.01Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut21 44 of 4 0.10Down
Larval fat body4 00 of 4 0.00Down
Larval trachea1 20 of 4 0.01Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly222 114 of 4

Looking for CG4476-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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