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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4479-RA through 18771 annotations produced 2 hits



protamine /// protamine (Mst35Ba /// Mst35Bb):

Annotation Number : CG4479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013300 /// FBgn0013301
Gbrowse : chr2L:14879068-14881652 (-) // 100.0 // /// chr2L:14882128-14883749 (-) // 93.52 //
Probeset : 1633776_s_at
Accessions : protein= NP_477050; /// NP_477051;, nucleotide= NM_057702; /// NM_057703;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0013300 /// FBgn0013301.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head4 10 of 4 0.00Down
Eye0 00 of 4 0.00Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland9 40 of 4 0.01Down
Crop5 10 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut2 10 of 4 0.00Down
Heart1 00 of 4 0.00Down
Fat body11 50 of 4 0.02Down
Ovary0 00 of 4 0.00Down
Testis3195 1754 of 4 4.70Up
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca6 10 of 4 0.01Down
Mated spermatheca6 20 of 4 0.01Down
Adult carcass26 71 of 4 0.00Down
Larval CNS6 40 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.00Down
Larval midgut5 20 of 4 0.01Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut3 10 of 4 0.01Down
Larval fat body814 4294 of 4 1.20None
Larval trachea27 411 of 4 0.04Down
Larval carcass4 20 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly678 594 of 4



protamine (Mst35Ba):

Annotation Number : CG4479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013300
Gbrowse : chr2L:14879068-14881652 (-) // 100.0 // /// chr2L:14882128-14883749 (-) // 93.52 //
Probeset : 1632367_at
Accessions : protein= NP_477050;, nucleotide= NM_057702;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0013300.
VDRC has 2 RNAi stocks for FBgn0013300 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 01 of 4 0.00Down
Head4 21 of 4 0.00Down
Eye2 00 of 4 0.01Down
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland13 21 of 4 0.06Down
Crop3 00 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut2 00 of 4 0.00Down
Heart2 10 of 4 0.01Down
Fat body6 22 of 4 0.03Down
Ovary2 00 of 4 0.00Down
Testis2015 1614 of 4 8.80Up
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca2 00 of 4 0.01Down
Mated spermatheca3 00 of 4 0.02Down
Adult carcass3 10 of 4 0.00Down
Larval CNS5 12 of 4 0.02Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut4 10 of 4 0.02Down
Larval tubule5 12 of 4 0.00Down
Larval hindgut3 12 of 4 0.02Down
Larval fat body313 1574 of 4 1.40None
Larval trachea10 131 of 4 0.04Down
Larval carcass1 10 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly227 164 of 4

Looking for CG4479-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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