FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4484-RA through 18771 annotations produced 1 hits

(CG4484):

Annotation Number : CG4484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035968
Gbrowse : chr3L:9196163-9198600 (-) // 100.0 //
Probeset : 1639110_at
Accessions : protein= NP_648292;, nucleotide= NM_140035;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008506 // sucrose:hydrogen symporter activity // i
FlyMine data for FBgn0035968.
Homophila reports that CG4484 is a close match (1e-44) to human gene AIM1;MATP;SHEP5;SLC45A2 (NP_001012527), a gene associated with Oculocutaneous albinism, type IV, 606574 (3);[Skin/hair/eye pigmentation 5, black/nonblack hair], 227240 (3);[Skin/hair/eye pigmentation 5, dark/fair skin], 227240 (3);[Skin/hair/eye pigmentation 5, dark/light eyes], 227240 (3).
BioGrid reports that CG4484 interacts with CG6769 CG8198 CG9926 .
VDRC has 3 RNAi stocks for FBgn0035968 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	131 ± 2	4 of 4	2.90	Up
Head	57 ± 3	4 of 4	1.30	None
Eye	7 ± 1	1 of 4	0.16	Down
Thoracicoabdominal ganglion	183 ± 6	4 of 4	4.10	Up
Salivary gland	11 ± 2	0 of 4	0.25	Down
Crop	183 ± 14	4 of 4	4.10	Up
Midgut	4 ± 2	1 of 4	0.10	Down
Tubule	1386 ± 352	4 of 4	31.10	Up
Hindgut	19 ± 1	4 of 4	0.40	Down
Heart	33 ± 2	4 of 4	0.76	None
Fat body	13 ± 2	3 of 4	0.29	Down
Ovary	14 ± 1	4 of 4	0.30	Down
Testis	21 ± 2	4 of 4	0.50	None
Male accessory glands	7 ± 2	1 of 4	0.20	Down
Virgin spermatheca	13 ± 1	4 of 4	0.30	Down
Mated spermatheca	14 ± 1	4 of 4	0.33	Down
Adult carcass	46 ± 3	4 of 4	1.00	None
Larval CNS	102 ± 20	4 of 4	2.29	Up
Larval Salivary gland	6 ± 1	0 of 4	0.14	Down
Larval midgut	369 ± 40	4 of 4	8.29	Up
Larval tubule	851 ± 119	4 of 4	19.10	Up
Larval hindgut	561 ± 41	4 of 4	12.59	Up
Larval fat body	818 ± 110	4 of 4	18.40	Up
Larval trachea	15 ± 6	4 of 4	0.34	Down
Larval carcass	129 ± 15	4 of 4	2.91	Up
S2 cells (growing)	8 ± 1	4 of 4	0.19	Down
Whole fly	44 ± 7	4 of 4

Looking for CG4484-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720