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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4485-RA through 18771 annotations produced 1 hits



Cytochrome P450-9b1 (Cyp9b1):

Annotation Number : CG4485
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015038
Gbrowse : chr2R:3015341-3017312 (-) // 100.0 //
Probeset : 1639495_at
Accessions : protein= NP_523645;, nucleotide= NM_078921;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0015038.
BDGP gene expression has embryonic in situ data for Cyp9b1: 4 pix of staining in 1 body parts.
Homophila reports that CG4485 is a close match (5e-12) to human gene CYP17;CYP17A1;P450C17 (NP_000093), a gene associated with 17,20-lyase deficiency, isolated, 202110 (3);17-alpha-hydroxylase/17,20-lyase deficiency, 202110 (3).
VDRC has 2 RNAi stocks for FBgn0015038 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 12 of 4 0.20Down
Head164 64 of 4 4.40Up
Eye73 94 of 4 1.98Up
Thoracicoabdominal ganglion6 12 of 4 0.20Down
Salivary gland10 40 of 4 0.27Down
Crop273 134 of 4 7.40Up
Midgut130 34 of 4 3.50Up
Tubule11 12 of 4 0.30Down
Hindgut134 64 of 4 3.60Up
Heart72 34 of 4 1.96Up
Fat body167 174 of 4 4.50Up
Ovary1 00 of 4 0.00Down
Testis2 00 of 4 0.10Down
Male accessory glands5 10 of 4 0.20Down
Virgin spermatheca80 34 of 4 2.18Up
Mated spermatheca96 54 of 4 2.61Up
Adult carcass99 44 of 4 2.70Up
Larval CNS3 10 of 4 0.09Down
Larval Salivary gland17 14 of 4 0.47Down
Larval midgut58 54 of 4 1.56Up
Larval tubule8 12 of 4 0.20Down
Larval hindgut65 54 of 4 1.75Up
Larval fat body91 194 of 4 2.50None
Larval trachea9 52 of 4 0.24Down
Larval carcass7 12 of 4 0.21Down
S2 cells (growing)1 00 of 4 0.05Down
Whole fly37 54 of 4

Looking for CG4485-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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