Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4496-RA through 18771 annotations produced 1 hits



(CG4496):

Annotation Number : CG4496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031894
Gbrowse : chr2L:7185460-7188068 (-) // 100.0 //
Probeset : 1635933_at
Accessions : protein= NP_609101;, nucleotide= NM_135257;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0031894.
Homophila reports that CG4496 is a close match (3e-12) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
VDRC has 2 RNAi stocks for FBgn0031894 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 03 of 4 0.70None
Head8 03 of 4 0.80None
Eye21 14 of 4 2.08Up
Thoracicoabdominal ganglion10 02 of 4 1.00None
Salivary gland7 20 of 4 0.73None
Crop6 21 of 4 0.60None
Midgut3 00 of 4 0.40Down
Tubule2 00 of 4 0.20Down
Hindgut3 00 of 4 0.30Down
Heart4 21 of 4 0.47None
Fat body3 20 of 4 0.37Down
Ovary28 34 of 4 2.80Up
Testis4 10 of 4 0.40Down
Male accessory glands120 84 of 411.60Up
Virgin spermatheca7 02 of 4 0.70None
Mated spermatheca4 10 of 4 0.45Down
Adult carcass6 11 of 4 0.70None
Larval CNS18 24 of 4 1.78Up
Larval Salivary gland45 94 of 4 4.42Up
Larval midgut5 10 of 4 0.50Down
Larval tubule4 00 of 4 0.40Down
Larval hindgut10 13 of 4 1.00None
Larval fat body8 00 of 4 0.80None
Larval trachea55 84 of 4 5.39Up
Larval carcass20 34 of 4 1.99Up
S2 cells (growing)22 24 of 4 2.16Up
Whole fly10 13 of 4

Looking for CG4496-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime