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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4500-RA through 18771 annotations produced 1 hits



/// (CG4500 /// DsecCG4500):

Annotation Number : CG4500
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028519
Gbrowse : chr2L:14027009-14029368 (+) // 99.82 //
Probeset : 1635937_at
Accessions : protein= NP_609696;, nucleotide= NM_135852;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0028519.
Homophila reports that CG4500 is a close match (2e-25) to human gene ACS4;ACSL4;FACL4;MRX63 (NP_075266), a gene associated with Mental retardation, X-linked nonspecific, 63, 300387 (3).
VDRC has 2 RNAi stocks for FBgn0028519 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.30Down
Head20 44 of 4 1.40None
Eye4 11 of 4 0.28Down
Thoracicoabdominal ganglion6 00 of 4 0.50Down
Salivary gland2 00 of 4 0.13Down
Crop4 10 of 4 0.30Down
Midgut5 10 of 4 0.40Down
Tubule5 10 of 4 0.40Down
Hindgut4 00 of 4 0.30Down
Heart4 12 of 4 0.30Down
Fat body13 12 of 4 0.86None
Ovary2 00 of 4 0.10Down
Testis3 10 of 4 0.20Down
Male accessory glands6 20 of 4 0.40None
Virgin spermatheca10 13 of 4 0.72None
Mated spermatheca8 12 of 4 0.56None
Adult carcass9 21 of 4 0.60None
Larval CNS2 10 of 4 0.15Down
Larval Salivary gland14 04 of 4 0.98None
Larval midgut1 00 of 4 0.13Down
Larval tubule6 10 of 4 0.40Down
Larval hindgut13 13 of 4 0.89None
Larval fat body1772 2314 of 4117.20Up
Larval trachea1 10 of 4 0.12Down
Larval carcass11 12 of 4 0.75None
S2 cells (growing)20 24 of 4 1.38None
Whole fly15 24 of 4

Looking for CG4500-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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