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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4501-RB through 18771 annotations produced 1 hits



bubblegum (bgm):

Annotation Number : CG4501
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027348
Gbrowse : chr2L:14013747-14019326 (+) // 100.0 //
Probeset : 1634048_a_at
Accessions : protein= NP_524698;, nucleotide= NM_079959;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0027348.
BDGP gene expression has embryonic in situ data for bgm: 40 pix of staining in 9 body parts.
Homophila reports that CG4501 is a close match (1e-31) to human gene ACS4;ACSL4;FACL4;MRX63 (NP_004449), a gene associated with Mental retardation, X-linked nonspecific, 63, 300387 (3).
TRiP has 1 RNAi stocks for FBgn0027348 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027348 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 34 of 4 0.10Down
Head709 734 of 4 1.20None
Eye335 634 of 4 0.58Down
Thoracicoabdominal ganglion58 14 of 4 0.10Down
Salivary gland193 144 of 4 0.33Down
Crop339 74 of 4 0.60Down
Midgut782 604 of 4 1.30Up
Tubule124 234 of 4 0.20Down
Hindgut404 204 of 4 0.70Down
Heart959 1204 of 4 1.65Up
Fat body1377 1884 of 4 2.37Up
Ovary701 54 of 4 1.20None
Testis37 24 of 4 0.10Down
Male accessory glands548 374 of 4 0.90None
Virgin spermatheca1625 674 of 4 2.80Up
Mated spermatheca1551 664 of 4 2.67Up
Adult carcass932 734 of 4 1.60Up
Larval CNS15 34 of 4 0.03Down
Larval Salivary gland40 54 of 4 0.07Down
Larval midgut1468 1294 of 4 2.53Up
Larval tubule13 22 of 4 0.00Down
Larval hindgut156 194 of 4 0.27Down
Larval fat body158 194 of 4 0.30Down
Larval trachea41 214 of 4 0.07Down
Larval carcass83 104 of 4 0.14Down
S2 cells (growing)8 11 of 4 0.01Down
Whole fly581 424 of 4

Looking for CG4501-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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