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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4502-RB through 18771 annotations produced 1 hits



(CG4502):

Annotation Number : CG4502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031896
Gbrowse : chr2L:7194907-7204259 (-) // 100.0 //
Probeset : 1636718_s_at
Accessions : protein= NP_609103; /// NP_723260;, nucleotide= NM_135259; /// NM_164741;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity //
FlyMine data for FBgn0031896.
BDGP gene expression has embryonic in situ data for CG4502: 12 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0031896 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031896 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain645 ± 244 of 4 1.60Up
Head367 ± 124 of 4 0.90None
Eye582 ± 114 of 4 1.45Up
Thoracicoabdominal ganglion726 ± 94 of 4 1.80Up
Salivary gland256 ± 114 of 4 0.64Down
Crop259 ± 84 of 4 0.60None
Midgut199 ± 94 of 4 0.50Down
Tubule148 ± 54 of 4 0.40Down
Hindgut273 ± 54 of 4 0.70None
Heart252 ± 134 of 4 0.63Down
Fat body273 ± 264 of 4 0.68None
Ovary721 ± 94 of 4 1.80Up
Testis661 ± 164 of 4 1.70Up
Male accessory glands253 ± 34 of 4 0.60Down
Virgin spermatheca373 ± 244 of 4 0.93None
Mated spermatheca392 ± 244 of 4 0.98None
Adult carcass227 ± 74 of 4 0.60Down
Larval CNS705 ± 204 of 4 1.76Up
Larval Salivary gland94 ± 104 of 4 0.23Down
Larval midgut119 ± 154 of 4 0.30Down
Larval tubule281 ± 124 of 4 0.70None
Larval hindgut187 ± 184 of 4 0.47Down
Larval fat body421 ± 364 of 4 1.10None
Larval trachea252 ± 274 of 4 0.63Down
Larval carcass190 ± 364 of 4 0.47Down
S2 cells (growing)157 ± 24 of 4 0.39Down
Whole fly401 ± 454 of 4

Looking for CG4502-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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