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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4520-RA through 18771 annotations produced 1 hits



(CG4520):

Annotation Number : CG4520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038355
Gbrowse : chr3R:11570375-11571745 (+) // 100.0 //
Probeset : 1635752_at
Accessions : protein= NP_650483;, nucleotide= NM_142226;
Pathway : 0005741 // mitochondrial outer membrane // inferred from electronic annotation
Interpro : 0008308 // voltage-gated anion channel activity // inferred from electronic annotation
FlyMine data for FBgn0038355.
VDRC has 2 RNAi stocks for FBgn0038355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 01 of 4 0.10Down
Head7 ± 20 of 4 0.10Down
Eye2 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion7 ± 00 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.09Down
Crop5 ± 20 of 4 0.10Down
Midgut12 ± 01 of 4 0.20Down
Tubule10 ± 00 of 4 0.10Down
Hindgut7 ± 21 of 4 0.10Down
Heart2 ± 10 of 4 0.03Down
Fat body8 ± 20 of 4 0.10Down
Ovary3 ± 11 of 4 0.00Down
Testis972 ± 284 of 412.30Up
Male accessory glands11 ± 20 of 4 0.10Down
Virgin spermatheca5 ± 00 of 4 0.07Down
Mated spermatheca6 ± 20 of 4 0.08Down
Adult carcass15 ± 40 of 4 0.20Down
Larval CNS5 ± 11 of 4 0.07Down
Larval Salivary gland10 ± 31 of 4 0.13Down
Larval midgut11 ± 31 of 4 0.14Down
Larval tubule12 ± 12 of 4 0.20Down
Larval hindgut7 ± 01 of 4 0.09Down
Larval fat body116 ± 514 of 4 1.50None
Larval trachea4 ± 31 of 4 0.05Down
Larval carcass8 ± 10 of 4 0.11Down
S2 cells (growing)6 ± 10 of 4 0.08Down
Whole fly79 ± 34 of 4

Looking for CG4520-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime