FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4538-RA through 18771 annotations produced 1 hits

(CG4538):

Annotation Number : CG4538
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038745
Gbrowse : chr3R:15724547-15729411 (-) // 100.0 //
Probeset : 1623972_a_at
Accessions : protein= NP_650843; /// NP_732463;, nucleotide= NM_142586; /// NM_169880;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0009368 // endopeptidase Clp complex //
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity
FlyMine data for FBgn0038745.
BDGP gene expression has embryonic in situ data for CG4538: 8 pix of staining in 6 body parts.
BioGrid reports that CG4538 interacts with CG8446 .
VDRC has 3 RNAi stocks for FBgn0038745 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	673 ± 11	4 of 4	0.90	None
Head	753 ± 13	4 of 4	1.00	None
Eye	860 ± 28	4 of 4	1.12	None
Thoracicoabdominal ganglion	853 ± 15	4 of 4	1.10	None
Salivary gland	961 ± 63	4 of 4	1.25	None
Crop	901 ± 29	4 of 4	1.20	None
Midgut	870 ± 21	4 of 4	1.10	None
Tubule	1131 ± 50	4 of 4	1.50	Up
Hindgut	1210 ± 19	4 of 4	1.60	Up
Heart	1361 ± 22	4 of 4	1.78	Up
Fat body	1629 ± 123	4 of 4	2.13	Up
Ovary	540 ± 9	4 of 4	0.70	Down
Testis	268 ± 23	4 of 4	0.40	Down
Male accessory glands	680 ± 32	4 of 4	0.90	None
Virgin spermatheca	1357 ± 100	4 of 4	1.77	Up
Mated spermatheca	1121 ± 51	4 of 4	1.46	Up
Adult carcass	1708 ± 67	4 of 4	2.20	Up
Larval CNS	426 ± 24	4 of 4	0.56	Down
Larval Salivary gland	543 ± 11	4 of 4	0.71	Down
Larval midgut	813 ± 77	4 of 4	1.06	None
Larval tubule	1460 ± 41	4 of 4	1.90	Up
Larval hindgut	854 ± 59	4 of 4	1.11	None
Larval fat body	1900 ± 222	4 of 4	2.50	Up
Larval trachea	546 ± 34	4 of 4	0.71	Down
Larval carcass	820 ± 106	4 of 4	1.07	None
S2 cells (growing)	319 ± 10	4 of 4	0.42	Down
Whole fly	766 ± 63	4 of 4

Looking for CG4538-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720