FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4539-RA through 18771 annotations produced 1 hits

missing imaginal precursors (Bka):

Annotation Number : CG4539
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010520
Gbrowse : chr2L:9895288-9896106 (+) // 100.0 //
Probeset : 1627349_at
Accessions : protein= NP_524867;, nucleotide= NM_080128;
Pathway : 0005634 // nucleus // non-traceable author statement
Interpro : 0016563 // transcription activator activity // non-traceable author statement
FlyMine data for FBgn0010520.
BDGP gene expression has embryonic in situ data for Bka: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0010520 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010520 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	74 ± 5	4 of 4	0.50	Down
Head	92 ± 3	4 of 4	0.60	Down
Eye	81 ± 5	4 of 4	0.51	Down
Thoracicoabdominal ganglion	87 ± 1	4 of 4	0.60	Down
Salivary gland	119 ± 6	4 of 4	0.75	Down
Crop	87 ± 2	4 of 4	0.50	Down
Midgut	78 ± 1	4 of 4	0.50	Down
Tubule	105 ± 8	4 of 4	0.70	Down
Hindgut	61 ± 1	4 of 4	0.40	Down
Heart	98 ± 5	4 of 4	0.62	Down
Fat body	113 ± 7	4 of 4	0.71	Down
Ovary	329 ± 4	4 of 4	2.10	Up
Testis	29 ± 1	4 of 4	0.20	Down
Male accessory glands	137 ± 5	4 of 4	0.90	None
Virgin spermatheca	111 ± 5	4 of 4	0.70	Down
Mated spermatheca	145 ± 6	4 of 4	0.92	None
Adult carcass	85 ± 5	4 of 4	0.50	Down
Larval CNS	188 ± 8	4 of 4	1.18	Up
Larval Salivary gland	134 ± 12	4 of 4	0.84	None
Larval midgut	58 ± 7	4 of 4	0.37	Down
Larval tubule	57 ± 2	4 of 4	0.40	Down
Larval hindgut	84 ± 10	4 of 4	0.53	Down
Larval fat body	48 ± 0	4 of 4	0.30	Down
Larval trachea	187 ± 22	4 of 4	1.18	None
Larval carcass	98 ± 17	4 of 4	0.62	Down
S2 cells (growing)	137 ± 3	4 of 4	0.86	None
Whole fly	158 ± 8	4 of 4

Looking for CG4539-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720