FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4545-RA through 18771 annotations produced 1 hits

cocaine-sensitive serotonin transporter (SerT):

Annotation Number : CG4545
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010414
Gbrowse : chr2R:20292117-20298070 (-) // 100.0 //
Probeset : 1623006_at
Accessions : protein= NP_523846;, nucleotide= NM_079122;
Pathway : engulfment // inferred from mutant phenotype /// 0015844 // monoamine transport // inferred from direct assay /// 00516
Interpro : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane
FlyMine data for FBgn0010414.
BDGP gene expression has embryonic in situ data for SerT: 24 pix of staining in 5 body parts.
Homophila reports that CG4545 is a close match (2e-58) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 2 RNAi stocks for FBgn0010414 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	134 ± 4	4 of 4	8.00	Up
Head	82 ± 3	4 of 4	4.90	Up
Eye	60 ± 8	4 of 4	3.62	Up
Thoracicoabdominal ganglion	136 ± 4	4 of 4	8.10	Up
Salivary gland	12 ± 2	1 of 4	0.74	None
Crop	6 ± 1	0 of 4	0.40	Down
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	7 ± 1	0 of 4	0.40	Down
Hindgut	27 ± 1	4 of 4	1.60	Up
Heart	2 ± 0	0 of 4	0.17	Down
Fat body	8 ± 4	0 of 4	0.53	Down
Ovary	3 ± 0	0 of 4	0.20	Down
Testis	7 ± 2	1 of 4	0.50	Down
Male accessory glands	80 ± 7	4 of 4	4.80	Up
Virgin spermatheca	13 ± 1	0 of 4	0.79	Down
Mated spermatheca	16 ± 1	0 of 4	1.00	None
Adult carcass	20 ± 3	1 of 4	1.20	None
Larval CNS	85 ± 12	4 of 4	5.06	Up
Larval Salivary gland	27 ± 1	3 of 4	1.64	Up
Larval midgut	7 ± 2	2 of 4	0.47	Down
Larval tubule	6 ± 1	0 of 4	0.40	Down
Larval hindgut	78 ± 9	4 of 4	4.69	Up
Larval fat body	4 ± 1	0 of 4	0.30	Down
Larval trachea	3 ± 3	0 of 4	0.20	Down
Larval carcass	16 ± 2	3 of 4	0.96	None
S2 cells (growing)	449 ± 32	4 of 4	26.76	Up
Whole fly	16 ± 0	4 of 4

Looking for CG4545-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720