FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4559-RA through 18771 annotations produced 2 hits

Imaginal disc growth factor 3 (Idgf3):

Annotation Number : CG4559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020414
Gbrowse : chr2L:16451070-16453176 (+) // 100.0 //
Probeset : 1626301_at
Accessions : protein= NP_477256; /// NP_723966; /// NP_723967;, nucleotide= NM_057908; /// NM_165157; /// NM_165158;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0020414.
BDGP gene expression has embryonic in situ data for Idgf3: 32 pix of staining in 3 body parts.
Homophila reports that CG4559 is a close match (3e-28) to human gene CHIT (NP_003456), a gene associated with [Chitotriosidase deficiency] (3).
VDRC has 2 RNAi stocks for FBgn0020414 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	73 ± 17	4 of 4	3.20	Up
Head	60 ± 16	4 of 4	2.60	None
Eye	16 ± 2	4 of 4	0.70	None
Thoracicoabdominal ganglion	93 ± 3	4 of 4	4.10	Up
Salivary gland	238 ± 39	4 of 4	10.39	Up
Crop	42 ± 3	4 of 4	1.90	None
Midgut	6 ± 1	1 of 4	0.30	None
Tubule	205 ± 88	4 of 4	9.00	Up
Hindgut	75 ± 12	4 of 4	3.30	Up
Heart	31 ± 2	4 of 4	1.38	None
Fat body	58 ± 10	4 of 4	2.57	Up
Ovary	7 ± 0	3 of 4	0.30	None
Testis	38 ± 4	4 of 4	1.70	None
Male accessory glands	6 ± 3	0 of 4	0.30	None
Virgin spermatheca	87 ± 16	4 of 4	3.80	Up
Mated spermatheca	76 ± 4	4 of 4	3.32	Up
Adult carcass	29 ± 4	3 of 4	1.30	None
Larval CNS	61 ± 13	4 of 4	2.68	Up
Larval Salivary gland	24 ± 5	4 of 4	1.05	None
Larval midgut	7 ± 3	1 of 4	0.33	None
Larval tubule	57 ± 11	4 of 4	2.50	None
Larval hindgut	70 ± 9	4 of 4	3.06	Up
Larval fat body	85 ± 10	4 of 4	3.70	Up
Larval trachea	18 ± 3	4 of 4	0.82	None
Larval carcass	20 ± 1	4 of 4	0.89	None
S2 cells (growing)	140 ± 18	4 of 4	6.14	Up
Whole fly	22 ± 6	4 of 4

Imaginal disc growth factor 3 (Idgf3):

Annotation Number : CG4559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020414
Gbrowse : chr2L:16451070-16453176 (+) // 100.0 //
Probeset : 1623643_s_at
Accessions : protein= NP_477256; /// NP_723966; /// NP_723967;, nucleotide= NM_057908; /// NM_165157; /// NM_165158;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0020414.
BDGP gene expression has embryonic in situ data for Idgf3: 32 pix of staining in 3 body parts.
Homophila reports that CG4559 is a close match (3e-28) to human gene CHIT (NP_003456), a gene associated with [Chitotriosidase deficiency] (3).
VDRC has 2 RNAi stocks for FBgn0020414 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	911 ± 26	4 of 4	2.10	Up
Head	1103 ± 20	4 of 4	2.50	Up
Eye	551 ± 41	4 of 4	1.24	None
Thoracicoabdominal ganglion	1409 ± 67	4 of 4	3.20	Up
Salivary gland	13655 ± 699	4 of 4	30.76	Up
Crop	1166 ± 59	4 of 4	2.60	Up
Midgut	113 ± 4	4 of 4	0.30	Down
Tubule	2375 ± 909	4 of 4	5.30	Up
Hindgut	2148 ± 40	4 of 4	4.80	Up
Heart	970 ± 34	4 of 4	2.19	Up
Fat body	1240 ± 49	4 of 4	2.79	Up
Ovary	60 ± 3	4 of 4	0.10	Down
Testis	783 ± 16	4 of 4	1.80	Up
Male accessory glands	70 ± 10	4 of 4	0.20	Down
Virgin spermatheca	2228 ± 86	4 of 4	5.02	Up
Mated spermatheca	1957 ± 55	4 of 4	4.41	Up
Adult carcass	1015 ± 53	4 of 4	2.30	Up
Larval CNS	606 ± 53	4 of 4	1.37	Up
Larval Salivary gland	1500 ± 118	4 of 4	3.38	Up
Larval midgut	130 ± 3	4 of 4	0.29	Down
Larval tubule	1117 ± 125	4 of 4	2.50	Up
Larval hindgut	1430 ± 19	4 of 4	3.22	Up
Larval fat body	3058 ± 301	4 of 4	6.90	Up
Larval trachea	1313 ± 231	4 of 4	2.96	Up
Larval carcass	762 ± 50	4 of 4	1.72	Up
S2 cells (growing)	3578 ± 31	4 of 4	8.06	Up
Whole fly	444 ± 34	4 of 4

Looking for CG4559-RA. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720