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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4559-RA through 18771 annotations produced 2 hits



Imaginal disc growth factor 3 (Idgf3):

Annotation Number : CG4559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020414
Gbrowse : chr2L:16451070-16453176 (+) // 100.0 //
Probeset : 1623643_s_at
Accessions : protein= NP_477256; /// NP_723966; /// NP_723967;, nucleotide= NM_057908; /// NM_165157; /// NM_165158;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0020414.
BDGP gene expression has embryonic in situ data for Idgf3: 32 pix of staining in 3 body parts.
Homophila reports that CG4559 is a close match (3e-28) to human gene CHIT (NP_003456), a gene associated with [Chitotriosidase deficiency] (3).
VDRC has 2 RNAi stocks for FBgn0020414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain911 264 of 4 2.10Up
Head1103 204 of 4 2.50Up
Eye551 414 of 4 1.24None
Thoracicoabdominal ganglion1409 674 of 4 3.20Up
Salivary gland13655 6994 of 430.76Up
Crop1166 594 of 4 2.60Up
Midgut113 44 of 4 0.30Down
Tubule2375 9094 of 4 5.30Up
Hindgut2148 404 of 4 4.80Up
Heart970 344 of 4 2.19Up
Fat body1240 494 of 4 2.79Up
Ovary60 34 of 4 0.10Down
Testis783 164 of 4 1.80Up
Male accessory glands70 104 of 4 0.20Down
Virgin spermatheca2228 864 of 4 5.02Up
Mated spermatheca1957 554 of 4 4.41Up
Adult carcass1015 534 of 4 2.30Up
Larval CNS606 534 of 4 1.37Up
Larval Salivary gland1500 1184 of 4 3.38Up
Larval midgut130 34 of 4 0.29Down
Larval tubule1117 1254 of 4 2.50Up
Larval hindgut1430 194 of 4 3.22Up
Larval fat body3058 3014 of 4 6.90Up
Larval trachea1313 2314 of 4 2.96Up
Larval carcass762 504 of 4 1.72Up
S2 cells (growing)3578 314 of 4 8.06Up
Whole fly444 344 of 4



Imaginal disc growth factor 3 (Idgf3):

Annotation Number : CG4559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020414
Gbrowse : chr2L:16451070-16453176 (+) // 100.0 //
Probeset : 1626301_at
Accessions : protein= NP_477256; /// NP_723966; /// NP_723967;, nucleotide= NM_057908; /// NM_165157; /// NM_165158;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0020414.
BDGP gene expression has embryonic in situ data for Idgf3: 32 pix of staining in 3 body parts.
Homophila reports that CG4559 is a close match (3e-28) to human gene CHIT (NP_003456), a gene associated with [Chitotriosidase deficiency] (3).
VDRC has 2 RNAi stocks for FBgn0020414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 174 of 4 3.20Up
Head60 164 of 4 2.60None
Eye16 24 of 4 0.70None
Thoracicoabdominal ganglion93 34 of 4 4.10Up
Salivary gland238 394 of 410.39Up
Crop42 34 of 4 1.90None
Midgut6 11 of 4 0.30None
Tubule205 884 of 4 9.00Up
Hindgut75 124 of 4 3.30Up
Heart31 24 of 4 1.38None
Fat body58 104 of 4 2.57Up
Ovary7 03 of 4 0.30None
Testis38 44 of 4 1.70None
Male accessory glands6 30 of 4 0.30None
Virgin spermatheca87 164 of 4 3.80Up
Mated spermatheca76 44 of 4 3.32Up
Adult carcass29 43 of 4 1.30None
Larval CNS61 134 of 4 2.68Up
Larval Salivary gland24 54 of 4 1.05None
Larval midgut7 31 of 4 0.33None
Larval tubule57 114 of 4 2.50None
Larval hindgut70 94 of 4 3.06Up
Larval fat body85 104 of 4 3.70Up
Larval trachea18 34 of 4 0.82None
Larval carcass20 14 of 4 0.89None
S2 cells (growing)140 184 of 4 6.14Up
Whole fly22 64 of 4

Looking for CG4559-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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