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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4572-RA through 18771 annotations produced 1 hits



/// GA18267 (CG4572 /// DpseGA18267):

Annotation Number : CG4572
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038738
Gbrowse : chr3R:15688229-15690114 (-) // 100.0 //
Probeset : 1632710_s_at
Accessions : protein= NP_650836; /// NP_732456; /// NP_732457;, nucleotide= NM_142579; /// NM_169878; /// NM_169879;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase
FlyMine data for FBgn0038738.
BDGP gene expression has embryonic in situ data for CG4572: 4 pix of staining in 1 body parts.
Homophila reports that CG4572 is a close match (6e-30) to human gene CTSA;GLB2;GSL;NGBE;PPGB (NP_000299), a gene associated with Galactosialidosis (3).
TRiP has 1 RNAi stocks for FBgn0038738 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038738 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain186 ± 44 of 4 0.40Down
Head604 ± 544 of 4 1.20None
Eye503 ± 84 of 4 0.96None
Thoracicoabdominal ganglion204 ± 104 of 4 0.40Down
Salivary gland304 ± 174 of 4 0.58Down
Crop460 ± 194 of 4 0.90None
Midgut848 ± 234 of 4 1.60Up
Tubule904 ± 404 of 4 1.70Up
Hindgut512 ± 64 of 4 1.00None
Heart2256 ± 414 of 4 4.31Up
Fat body1752 ± 1034 of 4 3.35Up
Ovary458 ± 104 of 4 0.90None
Testis520 ± 64 of 4 1.00None
Male accessory glands281 ± 144 of 4 0.50Down
Virgin spermatheca1052 ± 864 of 4 2.01Up
Mated spermatheca572 ± 494 of 4 1.09None
Adult carcass1648 ± 1374 of 4 3.10Up
Larval CNS371 ± 184 of 4 0.71Down
Larval Salivary gland418 ± 54 of 4 0.80Down
Larval midgut1234 ± 1014 of 4 2.36Up
Larval tubule1690 ± 294 of 4 3.20Up
Larval hindgut758 ± 514 of 4 1.45Up
Larval fat body1286 ± 1324 of 4 2.50Up
Larval trachea723 ± 284 of 4 1.38Up
Larval carcass752 ± 774 of 4 1.44None
S2 cells (growing)1036 ± 144 of 4 1.98Up
Whole fly523 ± 244 of 4

Looking for CG4572-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime