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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4575-RA through 18771 annotations produced 1 hits



/// giant (CG4575 /// gt):

Annotation Number : CG4575
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001150 /// FBgn0029920
Gbrowse : chrX:6844542-6845046 (+) // 100.0 //
Probeset : 1632684_s_at
Accessions : protein= NP_525049; /// NP_572367;, nucleotide= NM_080310; /// NM_132139;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
FlyMine data for FBgn0001150 /// FBgn0029920.
BioGrid reports that CG4575 interacts with CG5354 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 54 of 414.00Up
Head8 20 of 4 3.00None
Eye12 31 of 4 4.38None
Thoracicoabdominal ganglion20 30 of 4 7.40Up
Salivary gland11 20 of 4 4.04None
Crop1 00 of 4 0.60None
Midgut5 20 of 4 1.90None
Tubule4 00 of 4 1.70Up
Hindgut4 10 of 4 1.60None
Heart5 00 of 4 2.09None
Fat body10 50 of 4 3.59None
Ovary3 00 of 4 1.10None
Testis2 00 of 4 0.90None
Male accessory glands6 10 of 4 2.40Up
Virgin spermatheca5 10 of 4 1.82None
Mated spermatheca4 10 of 4 1.46None
Adult carcass7 20 of 4 2.80None
Larval CNS6 10 of 4 2.19Up
Larval Salivary gland4 20 of 4 1.52None
Larval midgut6 10 of 4 2.24None
Larval tubule4 10 of 4 1.70None
Larval hindgut4 20 of 4 1.60None
Larval fat body3 00 of 4 1.10None
Larval trachea6 40 of 4 2.35None
Larval carcass4 00 of 4 1.44None
S2 cells (growing)6 10 of 4 2.44None
Whole fly2 10 of 4

Looking for CG4575-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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