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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4579-RB through 18771 annotations produced 1 hits



tulipano (Nup154):

Annotation Number : CG4579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021761
Gbrowse : chr2L:11004822-11009878 (+) // 100.0 //
Probeset : 1622983_a_at
Accessions : protein= NP_477287; /// NP_477288;, nucleotide= NM_057939; /// NM_057940;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 00056
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0017056 // structural constituent of nuclear pore
FlyMine data for FBgn0021761.
BioGrid reports that CG4579 interacts with CG5642 .
TRiP has 1 RNAi stocks for FBgn0021761 available for purchase.
VDRC has 2 RNAi stocks for FBgn0021761 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 24 of 4 0.40Down
Head58 54 of 4 0.30Down
Eye56 14 of 4 0.25Down
Thoracicoabdominal ganglion101 24 of 4 0.50Down
Salivary gland60 44 of 4 0.27Down
Crop86 54 of 4 0.40Down
Midgut97 34 of 4 0.40Down
Tubule89 124 of 4 0.40Down
Hindgut61 24 of 4 0.30Down
Heart53 24 of 4 0.24Down
Fat body69 54 of 4 0.31Down
Ovary480 74 of 4 2.20Up
Testis58 44 of 4 0.30Down
Male accessory glands150 84 of 4 0.70Down
Virgin spermatheca58 44 of 4 0.26Down
Mated spermatheca73 14 of 4 0.33Down
Adult carcass62 54 of 4 0.30Down
Larval CNS302 134 of 4 1.36Up
Larval Salivary gland222 44 of 4 1.00None
Larval midgut248 224 of 4 1.11None
Larval tubule71 24 of 4 0.30Down
Larval hindgut128 44 of 4 0.58Down
Larval fat body52 54 of 4 0.20Down
Larval trachea197 234 of 4 0.89None
Larval carcass130 154 of 4 0.59Down
S2 cells (growing)313 94 of 4 1.41Up
Whole fly222 234 of 4

Looking for CG4579-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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