Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4580-RA through 18771 annotations produced 1 hits



(CG4580):

Annotation Number : CG4580
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032585
Gbrowse : chr2L:16488202-16490115 (+) // 100.0 //
Probeset : 1635132_at
Accessions : protein= NP_609795;, nucleotide= NM_135951;
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity
FlyMine data for FBgn0032585.
VDRC has 2 RNAi stocks for FBgn0032585 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.50None
Head1 10 of 4 1.00None
Eye1 00 of 4 0.59None
Thoracicoabdominal ganglion0 00 of 4 0.40None
Salivary gland3 10 of 4 2.12None
Crop1 10 of 4 0.90None
Midgut2 10 of 4 1.30None
Tubule2 00 of 4 1.30None
Hindgut2 00 of 4 1.10None
Heart1 00 of 4 0.78None
Fat body1 10 of 4 0.88None
Ovary0 00 of 4 0.30None
Testis1 00 of 4 0.90None
Male accessory glands3 10 of 4 2.10None
Virgin spermatheca1 00 of 4 0.62None
Mated spermatheca2 11 of 4 1.18None
Adult carcass5 20 of 4 3.20None
Larval CNS2 10 of 4 1.21None
Larval Salivary gland1 00 of 4 0.58None
Larval midgut3 00 of 4 1.70None
Larval tubule0 00 of 4 0.30None
Larval hindgut1 00 of 4 0.95None
Larval fat body7 10 of 4 4.30Up
Larval trachea1 20 of 4 0.86None
Larval carcass2 00 of 4 1.15None
S2 cells (growing)0 00 of 4 0.21None
Whole fly1 10 of 4

Looking for CG4580-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime