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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4581-RA through 18771 annotations produced 1 hits



thiolase (Thiolase):

Annotation Number : CG4581
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025352
Gbrowse : chr2R:19754123-19756139 (-) // 100.0 //
Probeset : 1634869_at
Accessions : protein= NP_477378;, nucleotide= NM_058030;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activi
FlyMine data for FBgn0025352.
BDGP gene expression has embryonic in situ data for Thiolase: 21 pix of staining in 12 body parts.
Homophila reports that CG4581 is a close match (8e-40) to human gene ACAT1 (NP_000010), a gene associated with Alpha-methylacetoacetic aciduria, 203750 (3).
BioGrid reports that CG4581 interacts with CG7954 .
TRiP has 1 RNAi stocks for FBgn0025352 available for purchase.
VDRC has 1 RNAi stocks for FBgn0025352 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain182 24 of 4 0.40Down
Head735 324 of 4 1.50Up
Eye344 304 of 4 0.72Down
Thoracicoabdominal ganglion211 74 of 4 0.40Down
Salivary gland346 204 of 4 0.72Down
Crop1570 784 of 4 3.30Up
Midgut514 174 of 4 1.10None
Tubule439 164 of 4 0.90Down
Hindgut846 194 of 4 1.80Up
Heart991 324 of 4 2.06Up
Fat body1683 1914 of 4 3.50Up
Ovary499 104 of 4 1.00None
Testis91 54 of 4 0.20Down
Male accessory glands295 84 of 4 0.60Down
Virgin spermatheca1209 804 of 4 2.52Up
Mated spermatheca1327 574 of 4 2.76Up
Adult carcass1167 374 of 4 2.40Up
Larval CNS378 74 of 4 0.79Down
Larval Salivary gland528 214 of 4 1.10None
Larval midgut759 184 of 4 1.58Up
Larval tubule505 224 of 4 1.10None
Larval hindgut644 224 of 4 1.34Up
Larval fat body1215 1454 of 4 2.50Up
Larval trachea569 314 of 4 1.19Up
Larval carcass720 254 of 4 1.50Up
S2 cells (growing)670 124 of 4 1.40Up
Whole fly480 74 of 4

Looking for CG4581-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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