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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4582-RA through 18771 annotations produced 1 hits



(CG4582):

Annotation Number : CG4582
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039344
Gbrowse : chr3R:21407188-21408686 (-) // 100.0 //
Probeset : 1625591_at
Accessions : protein= NP_651403;, nucleotide= NM_143146;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004465 // lipoprotein lipase activity // infer
FlyMine data for FBgn0039344.
Homophila reports that CG4582 is a close match (5e-23) to human gene LIPI;LPDL;PRED5 (NP_945347), a gene associated with {Hypertriglyceridemia, susceptibility to}, 145750 (3).
BioGrid reports that CG4582 interacts with CG9025 .
VDRC has 2 RNAi stocks for FBgn0039344 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 4.30None
Head0 ± 00 of 4 1.30None
Eye1 ± 00 of 4 2.38None
Thoracicoabdominal ganglion3 ± 10 of 4 5.20None
Salivary gland4 ± 20 of 4 7.38None
Crop0 ± 00 of 4 1.30None
Midgut3 ± 00 of 4 5.10Up
Tubule1 ± 00 of 4 2.90Up
Hindgut1 ± 00 of 4 2.50Up
Heart0 ± 00 of 4 1.50None
Fat body1 ± 00 of 4 2.73Up
Ovary1 ± 00 of 4 2.30None
Testis2 ± 00 of 4 3.10Up
Male accessory glands2 ± 00 of 4 3.80None
Virgin spermatheca1 ± 00 of 4 1.81Up
Mated spermatheca3 ± 10 of 4 5.15None
Adult carcass3 ± 10 of 4 4.70None
Larval CNS2 ± 10 of 4 3.15None
Larval Salivary gland2 ± 00 of 4 3.92Up
Larval midgut4 ± 00 of 4 7.46Up
Larval tubule2 ± 00 of 4 3.50None
Larval hindgut4 ± 10 of 4 6.77None
Larval fat body1 ± 00 of 4 2.90None
Larval trachea1 ± 20 of 4 2.96None
Larval carcass0 ± 00 of 4 1.31None
S2 cells (growing)1 ± 00 of 4 1.88Up
Whole fly0 ± 00 of 4

Looking for CG4582-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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