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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4621-RA through 18771 annotations produced 1 hits



YL-1 (YL-1):

Annotation Number : CG4621
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032321
Gbrowse : chr2L:10970454-10971871 (+) // 100.0 //
Probeset : 1629359_at
Accessions : protein= NP_609475;, nucleotide= NM_135631;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // infer
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0032321.
BDGP gene expression has embryonic in situ data for CG4621: 4 pix of staining in 1 body parts.
BioGrid reports that CG4621 interacts with CG7586 .
TRiP has 1 RNAi stocks for FBgn0032321 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 74 of 4 1.50Up
Head49 24 of 4 0.60Down
Eye45 14 of 4 0.59Down
Thoracicoabdominal ganglion88 44 of 4 1.10None
Salivary gland103 74 of 4 1.33Up
Crop88 54 of 4 1.10None
Midgut33 40 of 4 0.40Down
Tubule120 24 of 4 1.60Up
Hindgut76 34 of 4 1.00None
Heart66 24 of 4 0.86None
Fat body55 74 of 4 0.72Down
Ovary181 104 of 4 2.30Up
Testis77 34 of 4 1.00None
Male accessory glands45 44 of 4 0.60Down
Virgin spermatheca45 14 of 4 0.59Down
Mated spermatheca44 24 of 4 0.58Down
Adult carcass51 73 of 4 0.70Down
Larval CNS160 154 of 4 2.07Up
Larval Salivary gland130 124 of 4 1.69Up
Larval midgut23 20 of 4 0.31Down
Larval tubule65 34 of 4 0.80None
Larval hindgut76 34 of 4 0.99None
Larval fat body56 53 of 4 0.70None
Larval trachea83 124 of 4 1.07None
Larval carcass49 54 of 4 0.64Down
S2 cells (growing)214 144 of 4 2.77Up
Whole fly77 74 of 4

Looking for CG4621-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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