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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4630-RA through 18771 annotations produced 1 hits



(CG4630):

Annotation Number : CG4630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033809
Gbrowse : chr2R:9103163-9106752 (-) // 99.77 //
Probeset : 1633536_at
Accessions : protein= NP_610847;, nucleotide= NM_137003;
Interpro : 0015226 // carnitine transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0033809.
Homophila reports that CG4630 is a close match (3e-23) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 1 RNAi stocks for FBgn0033809 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 24 of 4 3.80Up
Head80 64 of 4 3.60Up
Eye11 14 of 4 0.50Down
Thoracicoabdominal ganglion57 24 of 4 2.60Up
Salivary gland16 41 of 4 0.73None
Crop57 44 of 4 2.60Up
Midgut96 14 of 4 4.30Up
Tubule123 24 of 4 5.50Up
Hindgut31 34 of 4 1.40None
Heart11 14 of 4 0.51Down
Fat body9 42 of 4 0.44Down
Ovary3 10 of 4 0.20Down
Testis8 10 of 4 0.40Down
Male accessory glands14 14 of 4 0.60Down
Virgin spermatheca10 13 of 4 0.47Down
Mated spermatheca14 14 of 4 0.67Down
Adult carcass54 34 of 4 2.40Up
Larval CNS6 13 of 4 0.30Down
Larval Salivary gland12 14 of 4 0.56Down
Larval midgut67 74 of 4 3.03Up
Larval tubule98 14 of 4 4.40Up
Larval hindgut27 24 of 4 1.22None
Larval fat body608 624 of 427.20Up
Larval trachea48 94 of 4 2.18Up
Larval carcass21 04 of 4 0.97None
S2 cells (growing)68 44 of 4 3.08Up
Whole fly22 24 of 4

Looking for CG4630-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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