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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4637-RA through 18771 annotations produced 1 hits



chr3R:18953890-18967716 (-) // 100.0 // (hedgehog):

Annotation Number : CG4637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626527_at
Accessions : protein= , nucleotide= NP_001034065; /// NP_524459;
Pathway : "0001745 // compound eye morphogenesis // traceable author statement /// 0001746 // Bolwig's organ morphogenesis // infe
Interpro : open tracheal system // inferred from mutant phenotype /// 0007440 // foregut morphogenesis // traceable author stateme
FlyMine data for full length.
Homophila reports that CG4637 is a close match (2e-79) to human gene DHH (NP_066382), a gene associated with Gonadal dysgenesis, 46XY, partial, with minifascicular neuropathy, 607080 (3).
BioGrid reports that CG4637 interacts with CG8787 CG3578 CG3578 CG5942 CG5942 CG4379 CG4379 CG2189 CG9885 CG9885 CG9885 CG2706 CG6551 CG6551 CG6551 CG10197 CG10197 CG9484 CG17743 CG2845 CG9375 CG6348 CG6348 CG10393 CG10393 CG17579 CG17579 CG2411 CG2411 CG2411 CG2411 CG2411 CG2411 CG2411 CG2411 CG2411 CG2411 CG2411 CG2411 CG2411 CG2411 CG2759 CG4889 CG4889 CG4889 CG4889 CG7672 CG2189 CG15793 CG3886 CG9375 CG4698 CG7508 CG7508 CG5461 CG2125 CG2125 CG2125 CG2125 CG2125 CG4952 CG4974 CG1464 CG1464 CG6963 CG12058 CG3895 CG6122 CG10072 CG7623 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head9 ± 13 of 4 0.60Down
Eye1 ± 10 of 4 0.13Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.41None
Crop181 ± 34 of 411.80Up
Midgut88 ± 34 of 4 5.80Up
Tubule2 ± 00 of 4 0.20Down
Hindgut169 ± 84 of 411.10Up
Heart3 ± 11 of 4 0.22Down
Fat body5 ± 30 of 4 0.36Down
Ovary1 ± 00 of 4 0.10Down
Testis45 ± 34 of 4 2.90Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca61 ± 44 of 4 4.00Up
Mated spermatheca77 ± 54 of 4 5.06Up
Adult carcass6 ± 20 of 4 0.40Down
Larval CNS3 ± 01 of 4 0.22Down
Larval Salivary gland2 ± 00 of 4 0.16Down
Larval midgut108 ± 84 of 4 7.09Up
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut58 ± 44 of 4 3.81Up
Larval fat body9 ± 22 of 4 0.60None
Larval trachea3 ± 10 of 4 0.21Down
Larval carcass13 ± 04 of 4 0.90None
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly15 ± 04 of 4

Looking for CG4637-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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