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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4645-RA through 18771 annotations produced 1 hits



(CG4645):

Annotation Number : CG4645
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030435
Gbrowse : chrX:12803985-12805948 (+) // 100.0 //
Probeset : 1632195_at
Accessions : protein= NP_572841;, nucleotide= NM_132613;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0030435.
BioGrid reports that CG4645 interacts with CG9654 .
VDRC has 2 RNAi stocks for FBgn0030435 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 14 of 4 1.10None
Head229 64 of 4 1.20Up
Eye251 124 of 4 1.27Up
Thoracicoabdominal ganglion229 44 of 4 1.20Up
Salivary gland1255 654 of 4 6.35Up
Crop275 84 of 4 1.40Up
Midgut333 124 of 4 1.70Up
Tubule227 114 of 4 1.20Up
Hindgut277 134 of 4 1.40Up
Heart209 74 of 4 1.06None
Fat body331 134 of 4 1.67Up
Ovary271 84 of 4 1.40Up
Testis121 44 of 4 0.60Down
Male accessory glands538 224 of 4 2.70Up
Virgin spermatheca257 84 of 4 1.30Up
Mated spermatheca282 34 of 4 1.43Up
Adult carcass227 84 of 4 1.20Up
Larval CNS213 204 of 4 1.08None
Larval Salivary gland1101 474 of 4 5.57Up
Larval midgut258 34 of 4 1.31Up
Larval tubule406 74 of 4 2.10Up
Larval hindgut285 84 of 4 1.44Up
Larval fat body302 304 of 4 1.50Up
Larval trachea202 304 of 4 1.02None
Larval carcass269 44 of 4 1.36Up
S2 cells (growing)257 34 of 4 1.30Up
Whole fly197 34 of 4

Looking for CG4645-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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