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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4647-RA through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L49 (mRpL49):

Annotation Number : CG4647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030433
Gbrowse : chrX:12801138-12801877 (+) // 100.0 //
Probeset : 1623859_at
Accessions : protein= NP_572839;, nucleotide= NM_132611;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0030433.
VDRC has 1 RNAi stocks for FBgn0030433 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain274 ± 64 of 4 0.80Down
Head243 ± 34 of 4 0.70Down
Eye302 ± 174 of 4 0.89None
Thoracicoabdominal ganglion399 ± 284 of 4 1.20None
Salivary gland165 ± 54 of 4 0.49Down
Crop192 ± 84 of 4 0.60Down
Midgut202 ± 84 of 4 0.60Down
Tubule190 ± 24 of 4 0.60Down
Hindgut284 ± 24 of 4 0.80Down
Heart282 ± 164 of 4 0.83Down
Fat body234 ± 204 of 4 0.69Down
Ovary462 ± 144 of 4 1.40Up
Testis70 ± 64 of 4 0.20Down
Male accessory glands243 ± 174 of 4 0.70Down
Virgin spermatheca336 ± 94 of 4 0.99None
Mated spermatheca329 ± 54 of 4 0.97None
Adult carcass279 ± 194 of 4 0.80Down
Larval CNS288 ± 314 of 4 0.85None
Larval Salivary gland204 ± 44 of 4 0.60Down
Larval midgut151 ± 104 of 4 0.44Down
Larval tubule96 ± 94 of 4 0.30Down
Larval hindgut297 ± 184 of 4 0.87None
Larval fat body63 ± 64 of 4 0.20Down
Larval trachea346 ± 314 of 4 1.02None
Larval carcass209 ± 174 of 4 0.62Down
S2 cells (growing)232 ± 54 of 4 0.68Down
Whole fly340 ± 134 of 4

Looking for CG4647-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime