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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4651-RA through 18771 annotations produced 1 hits



r-protein L13 (RpL13):

Annotation Number : CG4651
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011272
Gbrowse : chr2L:9967311-9968495 (+) // 100.0 //
Probeset : 1623836_at
Accessions : protein= NP_001033891; /// NP_523530;, nucleotide= NM_001038802; /// NM_078806;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0011272.
BioGrid reports that CG4651 interacts with CG9271 CG4755 CG8368 .
VDRC has 1 RNAi stocks for FBgn0011272 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2650 804 of 4 0.70None
Head4111 1654 of 4 1.20None
Eye6011 284 of 4 1.70Up
Thoracicoabdominal ganglion3607 924 of 4 1.00None
Salivary gland7504 3264 of 4 2.12Up
Crop5093 3314 of 4 1.40Up
Midgut4624 274 of 4 1.30Up
Tubule3686 414 of 4 1.00Up
Hindgut4151 1644 of 4 1.20None
Heart5556 4214 of 4 1.57Up
Fat body4120 7284 of 4 1.16None
Ovary2917 894 of 4 0.80None
Testis674 144 of 4 0.20Down
Male accessory glands7924 2554 of 4 2.20Up
Virgin spermatheca3982 1444 of 4 1.12None
Mated spermatheca3907 1134 of 4 1.10None
Adult carcass4681 3534 of 4 1.30Up
Larval CNS2013 1284 of 4 0.57Down
Larval Salivary gland5927 2984 of 4 1.67Up
Larval midgut3456 984 of 4 0.97None
Larval tubule3980 1014 of 4 1.10None
Larval hindgut3218 244 of 4 0.91None
Larval fat body6959 7464 of 4 2.00Up
Larval trachea5338 3314 of 4 1.51Up
Larval carcass3644 3304 of 4 1.03None
S2 cells (growing)3255 1074 of 4 0.92None
Whole fly3545 2454 of 4

Looking for CG4651-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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