Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4653-RA through 18771 annotations produced 1 hits



(CG4653):

Annotation Number : CG4653
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030776
Gbrowse : chrX:16598120-16599188 (+) // 100.0 //
Probeset : 1625212_at
Accessions : protein= NP_573150;, nucleotide= NM_132922;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030776.
Homophila reports that CG4653 is a close match (5e-11) to human gene F2 (NP_000497), a gene associated with Dysprothrombinemia (3);Hyperprothrombinemia (3);Hypoprothrombinemia (3).
BioGrid reports that CG4653 interacts with CG9527 .
VDRC has 1 RNAi stocks for FBgn0030776 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 0.00Down
Head9 ± 14 of 4 0.00Down
Eye10 ± 12 of 4 0.02Down
Thoracicoabdominal ganglion13 ± 33 of 4 0.00Down
Salivary gland9 ± 20 of 4 0.02Down
Crop10 ± 11 of 4 0.00Down
Midgut4120 ± 924 of 4 8.70Up
Tubule21 ± 112 of 4 0.00Down
Hindgut989 ± 504 of 4 2.10Up
Heart7 ± 12 of 4 0.02Down
Fat body18 ± 54 of 4 0.04Down
Ovary7 ± 12 of 4 0.00Down
Testis4 ± 00 of 4 0.00Down
Male accessory glands17 ± 23 of 4 0.00Down
Virgin spermatheca11 ± 24 of 4 0.03Down
Mated spermatheca10 ± 13 of 4 0.02Down
Adult carcass14 ± 32 of 4 0.00Down
Larval CNS7 ± 23 of 4 0.02Down
Larval Salivary gland9 ± 22 of 4 0.02Down
Larval midgut2590 ± 3094 of 4 5.46Up
Larval tubule8 ± 21 of 4 0.00Down
Larval hindgut225 ± 564 of 4 0.48None
Larval fat body12 ± 42 of 4 0.00Down
Larval trachea12 ± 34 of 4 0.03Down
Larval carcass13 ± 11 of 4 0.03Down
S2 cells (growing)7 ± 12 of 4 0.02Down
Whole fly474 ± 874 of 4

Looking for CG4653-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime