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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4654-RA through 18771 annotations produced 1 hits



chr2R:9109901-9115250 (+) // 100.0 // (lethal(2)49Fk):

Annotation Number : CG4654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637554_a_at
Accessions : protein= , nucleotide= NP_477039; /// NP_725267;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for full length.
BioGrid reports that CG4654 interacts with CG6376 CG7546 CG5942 CG7981 CG9075 CG3821 CG18740 CG7467 CG17077 CG9375 CG12559 CG10079 CG3938 CG3938 CG3938 CG3938 CG3612 CG3938 CG3938 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG7413 CG7413 CG4207 CG4063 CG18497 CG15173 CG8298 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 64 of 4 0.80Down
Head108 44 of 4 0.50Down
Eye71 34 of 4 0.31Down
Thoracicoabdominal ganglion127 64 of 4 0.50Down
Salivary gland197 104 of 4 0.85Down
Crop134 64 of 4 0.60Down
Midgut108 34 of 4 0.50Down
Tubule179 54 of 4 0.80Down
Hindgut120 54 of 4 0.50Down
Heart87 54 of 4 0.38Down
Fat body133 94 of 4 0.57Down
Ovary554 54 of 4 2.40Up
Testis49 24 of 4 0.20Down
Male accessory glands195 24 of 4 0.80Down
Virgin spermatheca98 54 of 4 0.42Down
Mated spermatheca93 94 of 4 0.40Down
Adult carcass115 84 of 4 0.50Down
Larval CNS318 224 of 4 1.37Up
Larval Salivary gland225 174 of 4 0.97None
Larval midgut109 54 of 4 0.47Down
Larval tubule151 54 of 4 0.70Down
Larval hindgut112 54 of 4 0.48Down
Larval fat body91 54 of 4 0.40Down
Larval trachea124 74 of 4 0.54Down
Larval carcass148 64 of 4 0.64Down
S2 cells (growing)330 134 of 4 1.42Up
Whole fly232 74 of 4

Looking for CG4654-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime