Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4677-RA through 18771 annotations produced 1 hits



myoblasts incompetent (lmd):

Annotation Number : CG4677
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039039
Gbrowse : chr3R:18846943-18852435 (-) // 100.0 //
Probeset : 1635295_a_at
Accessions : protein= NP_732811;, nucleotide= NM_170044;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0007517 // muscle organ development // inferred fr
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
FlyMine data for FBgn0039039.
BDGP gene expression has embryonic in situ data for lmd: 59 pix of staining in 5 body parts.
Homophila reports that CG4677 is a close match (9e-11) to human gene TNDM1;ZFP57 (NP_001103279), a gene associated with Diabetes mellitus, transient neonatal, 1, 601410 (3).
VDRC has 3 RNAi stocks for FBgn0039039 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head1 00 of 4 0.10Down
Eye0 00 of 4 0.07Down
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland9 10 of 4 0.91None
Crop4 10 of 4 0.40None
Midgut2 00 of 4 0.20Down
Tubule2 00 of 4 0.30Down
Hindgut1 00 of 4 0.10Down
Heart2 10 of 4 0.21Down
Fat body1 10 of 4 0.11Down
Ovary0 00 of 4 0.10Down
Testis16 14 of 4 1.70Up
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca1 00 of 4 0.10Down
Mated spermatheca2 00 of 4 0.21Down
Adult carcass3 00 of 4 0.30Down
Larval CNS1 10 of 4 0.18Down
Larval Salivary gland2 00 of 4 0.25Down
Larval midgut2 00 of 4 0.20Down
Larval tubule2 00 of 4 0.20Down
Larval hindgut4 10 of 4 0.44None
Larval fat body6 10 of 4 0.60None
Larval trachea1 10 of 4 0.11Down
Larval carcass10 20 of 4 1.09None
S2 cells (growing)0 00 of 4 0.06Down
Whole fly9 20 of 4

Looking for CG4677-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime