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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4685-RA through 18771 annotations produced 1 hits



CG4685 (Ssadh):

Annotation Number : CG4685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039349
Gbrowse : chr3R:21450526-21452643 (-) // 100.0 //
Probeset : 1635280_at
Accessions : protein= NP_001014665; /// NP_001014666; /// NP_001014667; /// NP_001163732; /// NP_651408;, nucleotide= NM_001014665; /// NM_001014666; /// NM_001014667; /// NM_001170261; /// NM_143151;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0004777 // succinate-semialdehyde dehydrogenase activity // inferred from direct assay /// 0004777 // succinate-semialde
FlyMine data for FBgn0039349.
Homophila reports that CG4685 is a close match (6e-34) to human gene ALDH10;ALDH3A2;FALDH;SLS (NP_000373), a gene associated with Sjogren-Larsson syndrome, 270200 (3).
VDRC has 2 RNAi stocks for FBgn0039349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1429 ± 464 of 4 6.40Up
Head668 ± 364 of 4 3.00Up
Eye385 ± 104 of 4 1.73Up
Thoracicoabdominal ganglion1791 ± 394 of 4 8.10Up
Salivary gland294 ± 134 of 4 1.32Up
Crop146 ± 84 of 4 0.70Down
Midgut718 ± 244 of 4 3.20Up
Tubule1476 ± 784 of 4 6.60Up
Hindgut556 ± 234 of 4 2.50Up
Heart251 ± 94 of 4 1.13Up
Fat body156 ± 164 of 4 0.70Down
Ovary179 ± 54 of 4 0.80Down
Testis43 ± 44 of 4 0.20Down
Male accessory glands209 ± 64 of 4 0.90None
Virgin spermatheca313 ± 154 of 4 1.41Up
Mated spermatheca223 ± 134 of 4 1.00None
Adult carcass222 ± 114 of 4 1.00None
Larval CNS597 ± 684 of 4 2.68Up
Larval Salivary gland99 ± 54 of 4 0.45Down
Larval midgut411 ± 224 of 4 1.85Up
Larval tubule843 ± 254 of 4 3.80Up
Larval hindgut402 ± 194 of 4 1.81Up
Larval fat body428 ± 324 of 4 1.90Up
Larval trachea145 ± 134 of 4 0.66Down
Larval carcass175 ± 114 of 4 0.79Down
S2 cells (growing)112 ± 34 of 4 0.51Down
Whole fly222 ± 54 of 4

Looking for CG4685-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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