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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4690-RA through 18771 annotations produced 1 hits

Tetraspanin 5D (Tsp5D):

Annotation Number : CG4690
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029837
Gbrowse : chrX:5963158-5965081 (-) // 100.0 //
Probeset : 1631285_at
Accessions : protein= NP_001138163; /// NP_511054;, nucleotide= NM_001144691; /// NM_078499;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0029837.
Homophila reports that CG4690 is a close match (2e-13) to human gene CD151;MER2;PETA3;SFA1 (NP_620599), a gene associated with Nephropathy with pretibial epidermolysis bullosa and deafness, 609057 (3);[Blood group, Raph], 179620 (3).
BioGrid reports that CG4690 interacts with CG5700 CG6808 .
TRiP has 1 RNAi stocks for FBgn0029837 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029837 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1019 244 of 423.60Up
Head408 274 of 4 9.40Up
Eye311 94 of 4 7.21Up
Thoracicoabdominal ganglion2303 524 of 453.20Up
Salivary gland149 94 of 4 3.45Up
Crop13 12 of 4 0.30Down
Midgut6 20 of 4 0.20Down
Tubule4 00 of 4 0.10Down
Hindgut28 24 of 4 0.60Down
Heart6 01 of 4 0.15Down
Fat body8 22 of 4 0.20Down
Ovary3 11 of 4 0.10Down
Testis14 14 of 4 0.30Down
Male accessory glands11 11 of 4 0.30Down
Virgin spermatheca7 12 of 4 0.17Down
Mated spermatheca8 11 of 4 0.18Down
Adult carcass54 74 of 4 1.30None
Larval CNS206 234 of 4 4.77Up
Larval Salivary gland5 11 of 4 0.14Down
Larval midgut5 11 of 4 0.12Down
Larval tubule6 12 of 4 0.20Down
Larval hindgut4 11 of 4 0.10Down
Larval fat body6 21 of 4 0.20Down
Larval trachea8 54 of 4 0.20Down
Larval carcass13 13 of 4 0.30Down
S2 cells (growing)94 74 of 4 2.19Up
Whole fly43 14 of 4

Looking for CG4690-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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