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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4695-RA through 18771 annotations produced 1 hits



(CG34114):

Annotation Number : CG4695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083950
Gbrowse : chr3R:6869693-6873922 (+) // 100.0 //
Probeset : 1624108_at
Accessions : protein= NP_001036705; /// NP_001163586;, nucleotide= NM_001043240; /// NM_001170115;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0083950.
VDRC has 5 RNAi stocks for FBgn0083950 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 34 of 4 7.20Up
Head13 23 of 4 2.00None
Eye4 10 of 4 0.63None
Thoracicoabdominal ganglion23 44 of 4 3.60Up
Salivary gland9 30 of 4 1.42None
Crop3 10 of 4 0.60None
Midgut1 00 of 4 0.30None
Tubule5 00 of 4 0.90None
Hindgut5 20 of 4 0.90None
Heart2 00 of 4 0.36None
Fat body13 50 of 4 1.98None
Ovary5 01 of 4 0.80None
Testis2 00 of 4 0.30None
Male accessory glands5 20 of 4 0.80None
Virgin spermatheca4 10 of 4 0.72None
Mated spermatheca7 20 of 4 1.07None
Adult carcass6 20 of 4 0.90None
Larval CNS9 14 of 4 1.45None
Larval Salivary gland6 10 of 4 0.95None
Larval midgut6 30 of 4 0.97None
Larval tubule6 00 of 4 1.00None
Larval hindgut5 12 of 4 0.85None
Larval fat body6 20 of 4 1.00None
Larval trachea5 11 of 4 0.83None
Larval carcass7 10 of 4 1.12None
S2 cells (growing)6 00 of 4 0.95None
Whole fly6 21 of 4

Looking for CG4695-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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