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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4697-RA through 18771 annotations produced 1 hits



Drosophila COP9 signalosome homolog 1 (CSN1a):

Annotation Number : CG4697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028838
Gbrowse : chr2L:14762860-14763955 (+) // 100.0 //
Probeset : 1626995_at
Accessions : protein= NP_609720;, nucleotide= NM_135876;
Pathway : 0008180 // signalosome // inferred from sequence or structural similarity /// 0008180 // signalosome // non-traceable au
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028838.
BioGrid reports that CG4697 interacts with CG9638 CG5094 CG7808 CG8495 CG8811 CG9282 CG7977 .
TRiP has 1 RNAi stocks for FBgn0028838 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028838 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.10Down
Head9 22 of 4 0.20Down
Eye2 00 of 4 0.06Down
Thoracicoabdominal ganglion7 20 of 4 0.20Down
Salivary gland16 41 of 4 0.34Down
Crop4 12 of 4 0.10Down
Midgut12 20 of 4 0.30Down
Tubule4 10 of 4 0.10Down
Hindgut10 11 of 4 0.20Down
Heart4 11 of 4 0.09Down
Fat body11 34 of 4 0.24Down
Ovary4 10 of 4 0.10Down
Testis596 234 of 412.40Up
Male accessory glands6 20 of 4 0.10Down
Virgin spermatheca10 14 of 4 0.23Down
Mated spermatheca10 32 of 4 0.22Down
Adult carcass14 41 of 4 0.30Down
Larval CNS7 23 of 4 0.16Down
Larval Salivary gland7 10 of 4 0.16Down
Larval midgut6 00 of 4 0.14Down
Larval tubule10 11 of 4 0.20Down
Larval hindgut8 13 of 4 0.17Down
Larval fat body51 253 of 4 1.10None
Larval trachea4 41 of 4 0.09Down
Larval carcass9 11 of 4 0.20Down
S2 cells (growing)6 21 of 4 0.14Down
Whole fly48 44 of 4

Looking for CG4697-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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