FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4700-RC through 18771 annotations produced 1 hits

semiphorin (Sema-2a):

Annotation Number : CG4700
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011260
Gbrowse : chr2R:12387700-12420933 (+) // 100.0 //
Probeset : 1629819_s_at
Accessions : protein= NP_477507; /// NP_599130; /// NP_725586; /// NP_995856;, nucleotide= NM_058159; /// NM_134303; /// NM_166178; /// NM_206134;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phys
FlyMine data for FBgn0011260.
BDGP gene expression has embryonic in situ data for Sema-2a: 16 pix of staining in 11 body parts.
Homophila reports that CG4700 is a close match (5e-55) to human gene CORD10;RP35;SEMA4A;SEMB (NP_071762), a gene associated with Cone-rod dystrophy 10, 610283 (3);Retinitis pigmentosa 35, 610282 (3).
BioGrid reports that CG4700 interacts with CG5424 CG5155 CG6174 CG7524 CG3665 CG3665 CG3340 CG18657 .
TRiP has 2 RNAi stocks for FBgn0011260 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011260 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	474 ± 9	4 of 4	1.10	None
Head	242 ± 12	4 of 4	0.60	Down
Eye	93 ± 6	4 of 4	0.22	Down
Thoracicoabdominal ganglion	293 ± 6	4 of 4	0.70	Down
Salivary gland	15 ± 4	2 of 4	0.03	Down
Crop	89 ± 2	4 of 4	0.20	Down
Midgut	140 ± 17	4 of 4	0.30	Down
Tubule	21 ± 5	3 of 4	0.10	Down
Hindgut	61 ± 3	4 of 4	0.10	Down
Heart	817 ± 26	4 of 4	1.89	Up
Fat body	151 ± 10	4 of 4	0.35	Down
Ovary	701 ± 12	4 of 4	1.60	Up
Testis	53 ± 2	4 of 4	0.10	Down
Male accessory glands	54 ± 5	4 of 4	0.10	Down
Virgin spermatheca	32 ± 3	4 of 4	0.07	Down
Mated spermatheca	39 ± 2	4 of 4	0.09	Down
Adult carcass	176 ± 8	4 of 4	0.40	Down
Larval CNS	1045 ± 14	4 of 4	2.42	Up
Larval Salivary gland	136 ± 23	4 of 4	0.32	Down
Larval midgut	90 ± 12	4 of 4	0.21	Down
Larval tubule	69 ± 10	4 of 4	0.20	Down
Larval hindgut	102 ± 3	4 of 4	0.24	Down
Larval fat body	79 ± 9	4 of 4	0.20	Down
Larval trachea	729 ± 69	4 of 4	1.68	Up
Larval carcass	216 ± 18	4 of 4	0.50	Down
S2 cells (growing)	247 ± 5	4 of 4	0.57	Down
Whole fly	433 ± 25	4 of 4

Looking for CG4700-RC. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720