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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4704-RA through 18771 annotations produced 1 hits



(CG4704):

Annotation Number : CG4704
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039029
Gbrowse : chr3R:18669913-18671034 (-) // 100.0 //
Probeset : 1626231_at
Accessions : protein= NP_651103;, nucleotide= NM_142846;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0039029.
BioGrid reports that CG4704 interacts with CG9282 CG9470 .
VDRC has 2 RNAi stocks for FBgn0039029 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head5 ± 11 of 4 0.20Down
Eye2 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.30Down
Salivary gland9 ± 40 of 4 0.35Down
Crop4 ± 00 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut6 ± 00 of 4 0.20Down
Heart1 ± 00 of 4 0.04Down
Fat body4 ± 20 of 4 0.16Down
Ovary4 ± 01 of 4 0.20Down
Testis261 ± 114 of 4 9.30Up
Male accessory glands4 ± 20 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.05Down
Mated spermatheca1 ± 00 of 4 0.07Down
Adult carcass8 ± 40 of 4 0.30Down
Larval CNS3 ± 10 of 4 0.11Down
Larval Salivary gland5 ± 21 of 4 0.21Down
Larval midgut7 ± 11 of 4 0.25Down
Larval tubule5 ± 11 of 4 0.20Down
Larval hindgut2 ± 10 of 4 0.07Down
Larval fat body18 ± 122 of 4 0.70None
Larval trachea4 ± 20 of 4 0.15Down
Larval carcass4 ± 10 of 4 0.15Down
S2 cells (growing)4 ± 00 of 4 0.16Down
Whole fly28 ± 24 of 4

Looking for CG4704-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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