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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4705-RA through 18771 annotations produced 1 hits



(CG4705):

Annotation Number : CG4705
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032339
Gbrowse : chr2L:11091445-11095005 (+) // 100.0 //
Probeset : 1637141_at
Accessions : protein= NP_609485; /// NP_995682;, nucleotide= NM_135641; /// NM_205960;
FlyMine data for FBgn0032339.
VDRC has 2 RNAi stocks for FBgn0032339 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 ± 24 of 4 0.70Down
Head38 ± 44 of 4 0.50Down
Eye34 ± 14 of 4 0.44Down
Thoracicoabdominal ganglion51 ± 34 of 4 0.70Down
Salivary gland49 ± 34 of 4 0.64Down
Crop49 ± 14 of 4 0.60Down
Midgut53 ± 44 of 4 0.70Down
Tubule112 ± 84 of 4 1.50Up
Hindgut43 ± 54 of 4 0.60Down
Heart70 ± 94 of 4 0.91None
Fat body69 ± 74 of 4 0.91None
Ovary96 ± 44 of 4 1.30Up
Testis222 ± 64 of 4 2.90Up
Male accessory glands65 ± 44 of 4 0.90None
Virgin spermatheca73 ± 44 of 4 0.96None
Mated spermatheca67 ± 14 of 4 0.88Down
Adult carcass64 ± 144 of 4 0.80None
Larval CNS47 ± 44 of 4 0.62Down
Larval Salivary gland63 ± 54 of 4 0.82None
Larval midgut42 ± 34 of 4 0.55Down
Larval tubule207 ± 44 of 4 2.70Up
Larval hindgut42 ± 34 of 4 0.55Down
Larval fat body138 ± 34 of 4 1.80Up
Larval trachea37 ± 44 of 4 0.48Down
Larval carcass41 ± 54 of 4 0.54Down
S2 cells (growing)117 ± 34 of 4 1.53Up
Whole fly77 ± 24 of 4

Looking for CG4705-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime