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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4715-RA through 18771 annotations produced 1 hits



Iris (Iris):

Annotation Number : CG4715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031305
Gbrowse : chr2L:1132329-1134120 (-) // 100.0 //
Probeset : 1633826_at
Accessions : protein= NP_608570;, nucleotide= NM_134726;
FlyMine data for FBgn0031305.
BDGP gene expression has embryonic in situ data for CG4715: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031305 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 14 of 4 0.10Down
Head925 ± 454 of 4 2.90Up
Eye435 ± 824 of 4 1.38None
Thoracicoabdominal ganglion39 ± 34 of 4 0.10Down
Salivary gland19 ± 40 of 4 0.06Down
Crop35 ± 44 of 4 0.10Down
Midgut10 ± 10 of 4 0.00Down
Tubule30 ± 62 of 4 0.10Down
Hindgut120 ± 44 of 4 0.40Down
Heart1786 ± 1174 of 4 5.64Up
Fat body2732 ± 1734 of 4 8.63Up
Ovary90 ± 44 of 4 0.30Down
Testis5 ± 10 of 4 0.00Down
Male accessory glands8 ± 10 of 4 0.00Down
Virgin spermatheca3790 ± 284 of 411.97Up
Mated spermatheca3370 ± 1414 of 410.65Up
Adult carcass1571 ± 644 of 4 5.00Up
Larval CNS5 ± 11 of 4 0.02Down
Larval Salivary gland13 ± 01 of 4 0.04Down
Larval midgut3 ± 00 of 4 0.01Down
Larval tubule9 ± 21 of 4 0.00Down
Larval hindgut20 ± 34 of 4 0.07Down
Larval fat body60 ± 34 of 4 0.20Down
Larval trachea14 ± 112 of 4 0.05Down
Larval carcass9 ± 10 of 4 0.03Down
S2 cells (growing)5 ± 10 of 4 0.02Down
Whole fly316 ± 124 of 4

Looking for CG4715-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime