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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4716-RA through 18771 annotations produced 2 hits



/// CG4716 (CG4716 /// DsimGD10957):

Annotation Number : CG4716
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033820
Gbrowse : chr2R:9144087-9144951 (+) // 100.0 //
Probeset : 1628963_at
Accessions : protein= NP_610858; /// NP_725273;, nucleotide= NM_137014; /// NM_165976;
Interpro : 0004486 // methylenetetrahydrofolate dehydrogenase activity // non-traceable author statement /// 0004487 // methylenete
FlyMine data for FBgn0033820.
BioGrid reports that CG4716 interacts with CG6357 .
VDRC has 3 RNAi stocks for FBgn0033820 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain401 ± 314 of 4 0.30Down
Head3307 ± 2324 of 4 2.10Up
Eye3629 ± 2874 of 4 2.28Up
Thoracicoabdominal ganglion212 ± 254 of 4 0.10Down
Salivary gland46 ± 114 of 4 0.03Down
Crop151 ± 454 of 4 0.10Down
Midgut2 ± 00 of 4 0.00Down
Tubule93 ± 183 of 4 0.10Down
Hindgut784 ± 614 of 4 0.50Down
Heart5602 ± 4924 of 4 3.53Up
Fat body5689 ± 5844 of 4 3.58Up
Ovary1 ± 00 of 4 0.00Down
Testis10 ± 02 of 4 0.00Down
Male accessory glands8 ± 40 of 4 0.00Down
Virgin spermatheca6521 ± 2184 of 4 4.10Up
Mated spermatheca6588 ± 1064 of 4 4.15Up
Adult carcass4957 ± 2094 of 4 3.10Up
Larval CNS2 ± 20 of 4 0.00Down
Larval Salivary gland50 ± 151 of 4 0.03Down
Larval midgut5 ± 30 of 4 0.00Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut57 ± 104 of 4 0.04Down
Larval fat body2345 ± 2504 of 4 1.50Up
Larval trachea97 ± 834 of 4 0.06Down
Larval carcass12 ± 51 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly1589 ± 1184 of 4



/// CG4716 (CG4716 /// DsimGD10957):

Annotation Number : CG4716
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033820
Gbrowse : chr2R:9144087-9144804 (+) // 100.0 //
Probeset : 1629046_a_at
Accessions : protein= NP_610858; /// NP_725273;, nucleotide= NM_137014; /// NM_165976;
Interpro : 0004486 // methylenetetrahydrofolate dehydrogenase activity // non-traceable author statement /// 0004487 // methylenete
FlyMine data for FBgn0033820.
BioGrid reports that CG4716 interacts with CG6357 .
VDRC has 3 RNAi stocks for FBgn0033820 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain299 ± 274 of 4 0.30Down
Head3153 ± 1564 of 4 3.20Up
Eye3269 ± 2484 of 4 3.33Up
Thoracicoabdominal ganglion98 ± 124 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.01Down
Crop81 ± 162 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule32 ± 62 of 4 0.00Down
Hindgut558 ± 454 of 4 0.60Down
Heart5163 ± 4804 of 4 5.26Up
Fat body5299 ± 6334 of 4 5.39Up
Ovary3 ± 10 of 4 0.00Down
Testis6 ± 11 of 4 0.00Down
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca4376 ± 1734 of 4 4.45Up
Mated spermatheca3455 ± 2224 of 4 3.52Up
Adult carcass4119 ± 1154 of 4 4.20Up
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland33 ± 100 of 4 0.03Down
Larval midgut2 ± 00 of 4 0.00Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut28 ± 62 of 4 0.03Down
Larval fat body1308 ± 1624 of 4 1.30None
Larval trachea53 ± 413 of 4 0.05Down
Larval carcass10 ± 40 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly982 ± 1004 of 4

Looking for CG4716-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime