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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4719-RA through 18771 annotations produced 1 hits



tankyrase (tankyrase):

Annotation Number : CG4719
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027508
Gbrowse : chr3R:21478806-21487003 (-) // 100.0 //
Probeset : 1628862_at
Accessions : protein= NP_651410;, nucleotide= NM_143153;
Interpro : "0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0005200 // structural consti
FlyMine data for FBgn0027508.
Homophila reports that CG4719 is a close match (1e-11) to human gene IKBA;NFKBIA (NP_065390), a gene associated with Ectodermal dysplasia, anhidrotic, with T-cell immunodeficiency, 612132 (3).
BioGrid reports that CG4719 interacts with CG7524 CG8886 CG9986 .
VDRC has 3 RNAi stocks for FBgn0027508 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain217 ± 84 of 4 2.50Up
Head122 ± 104 of 4 1.40Up
Eye230 ± 114 of 4 2.65Up
Thoracicoabdominal ganglion212 ± 54 of 4 2.40Up
Salivary gland139 ± 144 of 4 1.60Up
Crop108 ± 84 of 4 1.30None
Midgut111 ± 84 of 4 1.30None
Tubule114 ± 24 of 4 1.30Up
Hindgut94 ± 54 of 4 1.10None
Heart79 ± 24 of 4 0.92None
Fat body69 ± 24 of 4 0.80Down
Ovary179 ± 14 of 4 2.10Up
Testis49 ± 24 of 4 0.60Down
Male accessory glands143 ± 124 of 4 1.70Up
Virgin spermatheca138 ± 24 of 4 1.59Up
Mated spermatheca143 ± 164 of 4 1.65Up
Adult carcass81 ± 64 of 4 0.90None
Larval CNS187 ± 124 of 4 2.16Up
Larval Salivary gland122 ± 94 of 4 1.41Up
Larval midgut130 ± 44 of 4 1.51Up
Larval tubule135 ± 74 of 4 1.60Up
Larval hindgut114 ± 84 of 4 1.32Up
Larval fat body79 ± 44 of 4 0.90None
Larval trachea112 ± 74 of 4 1.30Up
Larval carcass96 ± 74 of 4 1.11None
S2 cells (growing)117 ± 64 of 4 1.35Up
Whole fly86 ± 34 of 4

Looking for CG4719-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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