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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4722-RA through 18771 annotations produced 1 hits



big brain (bib):

Annotation Number : CG4722
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000180
Gbrowse : chr2L:9984646-9995545 (+) // 100.0 //
Probeset : 1634044_at
Accessions : protein= NP_476837;, nucleotide= NM_057489;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred f
FlyMine data for FBgn0000180.
BDGP gene expression has embryonic in situ data for bib: 63 pix of staining in 15 body parts.
Homophila reports that CG4722 is a close match (4e-12) to human gene AQP3 (NP_004916), a gene associated with [Blood group GIL], 607457 (3).
BioGrid reports that CG4722 interacts with CG3936 CG3936 CG3936 CG3978 CG33101 .
TRiP has 1 RNAi stocks for FBgn0000180 available for purchase.
VDRC has 5 RNAi stocks for FBgn0000180 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 ± 54 of 4 7.60Up
Head18 ± 24 of 4 2.10Up
Eye6 ± 10 of 4 0.66None
Thoracicoabdominal ganglion97 ± 54 of 410.80Up
Salivary gland6 ± 20 of 4 0.73None
Crop2 ± 10 of 4 0.30Down
Midgut9 ± 04 of 4 1.00None
Tubule2 ± 00 of 4 0.30Down
Hindgut3 ± 10 of 4 0.30Down
Heart4 ± 11 of 4 0.49None
Fat body15 ± 44 of 4 1.73Up
Ovary6 ± 04 of 4 0.70None
Testis8 ± 04 of 4 1.00None
Male accessory glands5 ± 21 of 4 0.60None
Virgin spermatheca3 ± 01 of 4 0.39Down
Mated spermatheca2 ± 11 of 4 0.26Down
Adult carcass8 ± 12 of 4 1.00None
Larval CNS90 ± 254 of 4 9.98Up
Larval Salivary gland1 ± 00 of 4 0.21Down
Larval midgut21 ± 34 of 4 2.35Up
Larval tubule4 ± 10 of 4 0.50None
Larval hindgut7 ± 13 of 4 0.80None
Larval fat body7 ± 11 of 4 0.80None
Larval trachea17 ± 74 of 4 1.94None
Larval carcass13 ± 14 of 4 1.50None
S2 cells (growing)20 ± 34 of 4 2.23Up
Whole fly9 ± 14 of 4

Looking for CG4722-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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