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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4729-RA through 18771 annotations produced 1 hits



(CG4729):

Annotation Number : CG4729
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036623
Gbrowse : chr3L:16374870-16379057 (-) // 100.0 //
Probeset : 1626646_s_at
Accessions : protein= NP_648888; /// NP_730160; /// NP_730161; /// NP_730162;, nucleotide= NM_140631; /// NM_168661; /// NM_168662; /// NM_168663;
Interpro : 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0036623.
BDGP gene expression has embryonic in situ data for CG4729: 14 pix of staining in 10 body parts.
BioGrid reports that CG4729 interacts with CG9928 CG8614 .
VDRC has 3 RNAi stocks for FBgn0036623 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain371 74 of 4 0.90Down
Head513 164 of 4 1.20Up
Eye396 194 of 4 0.92None
Thoracicoabdominal ganglion396 124 of 4 0.90None
Salivary gland2168 354 of 4 5.02Up
Crop424 114 of 4 1.00None
Midgut1407 474 of 4 3.30Up
Tubule393 144 of 4 0.90Down
Hindgut908 174 of 4 2.10Up
Heart1354 434 of 4 3.13Up
Fat body1594 874 of 4 3.69Up
Ovary328 34 of 4 0.80Down
Testis163 24 of 4 0.40Down
Male accessory glands330 124 of 4 0.80Down
Virgin spermatheca1221 414 of 4 2.83Up
Mated spermatheca937 944 of 4 2.17Up
Adult carcass1178 164 of 4 2.70Up
Larval CNS573 254 of 4 1.33Up
Larval Salivary gland375 174 of 4 0.87Down
Larval midgut1135 374 of 4 2.63Up
Larval tubule540 144 of 4 1.20Up
Larval hindgut420 114 of 4 0.97None
Larval fat body1157 994 of 4 2.70Up
Larval trachea681 1494 of 4 1.58Up
Larval carcass489 184 of 4 1.13None
S2 cells (growing)726 174 of 4 1.68Up
Whole fly432 134 of 4

Looking for CG4729-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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