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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4730-RA through 18771 annotations produced 1 hits



(CG4730):

Annotation Number : CG4730
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039355
Gbrowse : chr3R:21502792-21504403 (-) // 100.0 //
Probeset : 1629344_at
Accessions : protein= NP_651413;, nucleotide= NM_143156;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0039355.
Homophila reports that CG4730 is a close match (5e-11) to human gene STQTL10;ZBTB38 (NP_001073881), a gene associated with {Stature QTL 10}, 612221 (3).
BioGrid reports that CG4730 interacts with CG4936 CG6689 CG7251 CG5717 CG5851 CG8280 CG9396 .
VDRC has 3 RNAi stocks for FBgn0039355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 04 of 4 0.50Down
Head10 04 of 4 0.20Down
Eye9 23 of 4 0.22Down
Thoracicoabdominal ganglion25 24 of 4 0.60Down
Salivary gland26 13 of 4 0.60Down
Crop9 11 of 4 0.20Down
Midgut11 13 of 4 0.30Down
Tubule16 11 of 4 0.40Down
Hindgut35 14 of 4 0.80None
Heart7 04 of 4 0.18Down
Fat body6 21 of 4 0.15Down
Ovary85 14 of 4 2.00Up
Testis62 14 of 4 1.40Up
Male accessory glands6 21 of 4 0.10Down
Virgin spermatheca10 12 of 4 0.23Down
Mated spermatheca7 01 of 4 0.18Down
Adult carcass14 14 of 4 0.30Down
Larval CNS35 24 of 4 0.81Down
Larval Salivary gland29 24 of 4 0.68Down
Larval midgut7 10 of 4 0.16Down
Larval tubule22 04 of 4 0.50Down
Larval hindgut7 13 of 4 0.18Down
Larval fat body13 42 of 4 0.30Down
Larval trachea9 24 of 4 0.21Down
Larval carcass9 01 of 4 0.22Down
S2 cells (growing)33 14 of 4 0.76Down
Whole fly43 24 of 4

Looking for CG4730-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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