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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4734-RA through 18771 annotations produced 1 hits



(CG4734):

Annotation Number : CG4734
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033826
Gbrowse : chr2R:9184739-9185972 (-) // 100.0 //
Probeset : 1639295_at
Accessions : protein= NP_610864;, nucleotide= NM_137020;
FlyMine data for FBgn0033826.
VDRC has 2 RNAi stocks for FBgn0033826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.00None
Head5 ± 00 of 4 0.00None
Eye3 ± 10 of 4 0.01None
Thoracicoabdominal ganglion4 ± 10 of 4 0.00None
Salivary gland28 ± 41 of 4 0.05None
Crop5 ± 20 of 4 0.00None
Midgut4596 ± 1224 of 4 7.70Up
Tubule4 ± 00 of 4 0.00Down
Hindgut6 ± 00 of 4 0.00None
Heart2 ± 10 of 4 0.00None
Fat body9 ± 20 of 4 0.02None
Ovary2 ± 10 of 4 0.00None
Testis5 ± 00 of 4 0.00None
Male accessory glands13 ± 10 of 4 0.00None
Virgin spermatheca12 ± 30 of 4 0.02None
Mated spermatheca7 ± 10 of 4 0.01None
Adult carcass6 ± 10 of 4 0.00None
Larval CNS2 ± 10 of 4 0.00None
Larval Salivary gland4 ± 20 of 4 0.01None
Larval midgut5529 ± 1424 of 4 9.22Up
Larval tubule1 ± 00 of 4 0.00None
Larval hindgut7 ± 10 of 4 0.01None
Larval fat body5 ± 20 of 4 0.00None
Larval trachea1 ± 00 of 4 0.00None
Larval carcass2 ± 00 of 4 0.00None
S2 cells (growing)3 ± 10 of 4 0.01None
Whole fly599 ± 2014 of 4

Looking for CG4734-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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