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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4739-RA through 18771 annotations produced 1 hits



Ugt86Dc (Ugt86Dc):

Annotation Number : CG4739
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040257
Gbrowse : chr3R:6980376-6982235 (+) // 100.0 //
Probeset : 1628449_at
Accessions : protein= NP_652625;, nucleotide= NM_144368;
Interpro : "0003851 // 2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity // inferred from sequence or structural simil
FlyMine data for FBgn0040257.
Homophila reports that CG4739 is a close match (3e-52) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
TRiP has 1 RNAi stocks for FBgn0040257 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head8 ± 10 of 4 0.50None
Eye4 ± 10 of 4 0.27None
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland11 ± 30 of 4 0.68None
Crop4 ± 10 of 4 0.20None
Midgut291 ± 94 of 417.50Up
Tubule139 ± 194 of 4 8.40Up
Hindgut7 ± 10 of 4 0.40None
Heart7 ± 11 of 4 0.45None
Fat body15 ± 53 of 4 0.95None
Ovary1 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands81 ± 124 of 4 4.90Up
Virgin spermatheca27 ± 14 of 4 1.68None
Mated spermatheca11 ± 11 of 4 0.69None
Adult carcass6 ± 20 of 4 0.40None
Larval CNS1 ± 10 of 4 0.11Down
Larval Salivary gland3 ± 10 of 4 0.21None
Larval midgut5 ± 20 of 4 0.35None
Larval tubule4 ± 10 of 4 0.30None
Larval hindgut4 ± 10 of 4 0.24None
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea2 ± 10 of 4 0.13Down
Larval carcass7 ± 10 of 4 0.45None
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly16 ± 42 of 4

Looking for CG4739-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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