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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4740-RA through 18771 annotations produced 1 hits



attacin (AttC):

Annotation Number : CG4740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041579
Gbrowse : chr2R:9281209-9282184 (+) // 100.0 //
Probeset : 1641419_at
Accessions : protein= NP_523729;, nucleotide= NM_079005;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
FlyMine data for FBgn0041579.
VDRC has 4 RNAi stocks for FBgn0041579 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 ± 134 of 4 0.40None
Head1460 ± 4984 of 4 8.20None
Eye1998 ± 11584 of 411.17None
Thoracicoabdominal ganglion37 ± 84 of 4 0.20None
Salivary gland26 ± 72 of 4 0.15None
Crop44 ± 162 of 4 0.20None
Midgut20 ± 22 of 4 0.10None
Tubule118 ± 621 of 4 0.70None
Hindgut107 ± 504 of 4 0.60None
Heart625 ± 784 of 4 3.50Up
Fat body1128 ± 3294 of 4 6.31Up
Ovary9 ± 12 of 4 0.10None
Testis26 ± 24 of 4 0.10None
Male accessory glands10 ± 21 of 4 0.10None
Virgin spermatheca3374 ± 8594 of 418.86Up
Mated spermatheca1375 ± 3854 of 4 7.68Up
Adult carcass542 ± 1434 of 4 3.00None
Larval CNS5 ± 03 of 4 0.03None
Larval Salivary gland67 ± 303 of 4 0.38None
Larval midgut11 ± 21 of 4 0.06None
Larval tubule15 ± 31 of 4 0.10None
Larval hindgut66 ± 154 of 4 0.37None
Larval fat body1362 ± 7334 of 4 7.60None
Larval trachea103 ± 554 of 4 0.58None
Larval carcass39 ± 152 of 4 0.22None
S2 cells (growing)3 ± 10 of 4 0.02None
Whole fly178 ± 1184 of 4

Looking for CG4740-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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