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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4746-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG4746
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:5899892-5907211 (-) // 100.0 //
Probeset : 1628477_s_at
Accessions : protein= NP_651971;, nucleotide= NM_143714;
Interpro : 0005515 // protein binding // inferred from physical interaction


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.50None
Head1 ± 00 of 4 1.40None
Eye1 ± 00 of 4 2.07None
Thoracicoabdominal ganglion2 ± 00 of 4 3.60None
Salivary gland3 ± 00 of 4 4.38None
Crop0 ± 00 of 4 1.20None
Midgut1 ± 00 of 4 2.10None
Tubule2 ± 00 of 4 3.40Up
Hindgut0 ± 00 of 4 1.30None
Heart0 ± 00 of 4 0.76None
Fat body1 ± 00 of 4 1.48None
Ovary0 ± 00 of 4 0.80None
Testis0 ± 00 of 4 0.90None
Male accessory glands5 ± 20 of 4 8.10None
Virgin spermatheca1 ± 00 of 4 2.14Up
Mated spermatheca2 ± 10 of 4 3.38None
Adult carcass0 ± 00 of 4 1.20None
Larval CNS0 ± 00 of 4 0.76None
Larval Salivary gland3 ± 10 of 4 4.28None
Larval midgut2 ± 00 of 4 2.86None
Larval tubule1 ± 00 of 4 1.60None
Larval hindgut2 ± 00 of 4 2.83None
Larval fat body2 ± 00 of 4 2.70None
Larval trachea2 ± 10 of 4 3.21None
Larval carcass1 ± 00 of 4 1.66None
S2 cells (growing)2 ± 00 of 4 3.14None
Whole fly0 ± 00 of 4

Looking for CG4746-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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