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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4753-RB through 18771 annotations produced 1 hits



(CG4753):

Annotation Number : CG4753
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036622
Gbrowse : chr3L:16372069-16374670 (-) // 100.0 //
Probeset : 1624310_s_at
Accessions : protein= NP_648887; /// NP_730158;, nucleotide= NM_140630; /// NM_168660;
Interpro : 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0036622.
BDGP gene expression has embryonic in situ data for CG4753: 16 pix of staining in 5 body parts.
VDRC has 5 RNAi stocks for FBgn0036622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 10 of 4 0.00Down
Head144 224 of 4 0.30Down
Eye88 164 of 4 0.21Down
Thoracicoabdominal ganglion11 10 of 4 0.00Down
Salivary gland29 43 of 4 0.07Down
Crop1522 844 of 4 3.60Up
Midgut2250 934 of 4 5.30Up
Tubule289 294 of 4 0.70Down
Hindgut685 364 of 4 1.60Up
Heart308 204 of 4 0.72None
Fat body684 1344 of 4 1.61Up
Ovary307 94 of 4 0.70None
Testis8 21 of 4 0.00Down
Male accessory glands369 54 of 4 0.90None
Virgin spermatheca282 144 of 4 0.66None
Mated spermatheca332 164 of 4 0.78None
Adult carcass304 44 of 4 0.70None
Larval CNS2 10 of 4 0.00Down
Larval Salivary gland11 30 of 4 0.03Down
Larval midgut2412 1924 of 4 5.66Up
Larval tubule26 30 of 4 0.10Down
Larval hindgut122 244 of 4 0.29Down
Larval fat body16 30 of 4 0.00Down
Larval trachea26 34 of 4 0.06Down
Larval carcass80 154 of 4 0.19Down
S2 cells (growing)5 20 of 4 0.01Down
Whole fly426 524 of 4

Looking for CG4753-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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