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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4755-RA through 18771 annotations produced 1 hits



RhoGAP92B (RhoGAP92B):

Annotation Number : CG4755
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038747
Gbrowse : chr3R:15730860-15739455 (+) // 100.0 //
Probeset : 1625747_at
Accessions : protein= NP_650844;, nucleotide= NM_142587;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0005096 // GTPase activator activity // inferred from sequence or structural similarity /// 0005096 // GTPase activator
FlyMine data for FBgn0038747.
BDGP gene expression has embryonic in situ data for RhoGAP92B: 17 pix of staining in 3 body parts.
Homophila reports that CG4755 is a close match (3e-11) to human gene DLC1 (NP_872584), a gene associated with Colorectal cancer, somatic (3).
BioGrid reports that CG4755 interacts with CG4882 CG5334 CG5502 CG5637 CG6251 CG6398 CG6441 CG6755 CG6856 CG7102 CG9277 CG9938 .
TRiP has 1 RNAi stocks for FBgn0038747 available for purchase.
VDRC has 6 RNAi stocks for FBgn0038747 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 24 of 4 0.40Down
Head95 ± 104 of 4 0.50Down
Eye72 ± 64 of 4 0.41Down
Thoracicoabdominal ganglion65 ± 14 of 4 0.40Down
Salivary gland197 ± 54 of 4 1.12None
Crop175 ± 54 of 4 1.00None
Midgut237 ± 54 of 4 1.40Up
Tubule123 ± 34 of 4 0.70Down
Hindgut181 ± 64 of 4 1.00None
Heart89 ± 94 of 4 0.51Down
Fat body104 ± 104 of 4 0.59Down
Ovary482 ± 74 of 4 2.70Up
Testis186 ± 94 of 4 1.10None
Male accessory glands402 ± 44 of 4 2.30Up
Virgin spermatheca205 ± 34 of 4 1.17None
Mated spermatheca220 ± 34 of 4 1.25Up
Adult carcass72 ± 24 of 4 0.40Down
Larval CNS127 ± 74 of 4 0.72Down
Larval Salivary gland325 ± 154 of 4 1.85Up
Larval midgut343 ± 164 of 4 1.95Up
Larval tubule175 ± 54 of 4 1.00None
Larval hindgut232 ± 34 of 4 1.32Up
Larval fat body401 ± 184 of 4 2.30Up
Larval trachea87 ± 84 of 4 0.50Down
Larval carcass188 ± 24 of 4 1.07None
S2 cells (growing)543 ± 214 of 4 3.09Up
Whole fly176 ± 94 of 4

Looking for CG4755-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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