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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4758-RA through 18771 annotations produced 1 hits



chr2L:10009385-10013171 (+) // 100.0 // (Translocation protein 1):

Annotation Number : CG4758
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633100_a_at
Accessions : protein= , nucleotide= NP_477008; /// NP_723510;
Pathway : 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from sequence or structural similarit
Interpro : 0005784 // Sec61 translocon complex // inferred from sequence or structural similarity /// 0005784 // Sec61 translocon c
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain596 ± 224 of 4 1.80Up
Head669 ± 354 of 4 2.00Up
Eye780 ± 334 of 4 2.32Up
Thoracicoabdominal ganglion882 ± 294 of 4 2.60Up
Salivary gland981 ± 814 of 4 2.92Up
Crop1355 ± 434 of 4 4.00Up
Midgut604 ± 94 of 4 1.80Up
Tubule847 ± 234 of 4 2.50Up
Hindgut1003 ± 244 of 4 3.00Up
Heart882 ± 194 of 4 2.62Up
Fat body1202 ± 594 of 4 3.57Up
Ovary246 ± 54 of 4 0.70None
Testis54 ± 14 of 4 0.20Down
Male accessory glands540 ± 184 of 4 1.60Up
Virgin spermatheca1304 ± 314 of 4 3.88Up
Mated spermatheca1534 ± 784 of 4 4.56Up
Adult carcass634 ± 464 of 4 1.90Up
Larval CNS366 ± 84 of 4 1.09None
Larval Salivary gland675 ± 294 of 4 2.01Up
Larval midgut426 ± 144 of 4 1.27None
Larval tubule751 ± 114 of 4 2.20Up
Larval hindgut565 ± 34 of 4 1.68Up
Larval fat body480 ± 274 of 4 1.40Up
Larval trachea541 ± 264 of 4 1.61Up
Larval carcass674 ± 144 of 4 2.00Up
S2 cells (growing)338 ± 94 of 4 1.00None
Whole fly336 ± 314 of 4

Looking for CG4758-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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