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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4759-RA through 18771 annotations produced 1 hits



Ribosomal protein L27 (RpL27):

Annotation Number : CG4759
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039359
Gbrowse : chr3R:21509459-21510813 (-) // 100.0 //
Probeset : 1632335_at
Accessions : protein= NP_651417;, nucleotide= NM_143160;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0039359.
BDGP gene expression has embryonic in situ data for CG4759: 4 pix of staining in 1 body parts.
BioGrid reports that CG4759 interacts with CG4832 CG5009 CG6049 CG7417 CG8219 CG8349 CG9632 .
VDRC has 2 RNAi stocks for FBgn0039359 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2620 504 of 4 0.70Down
Head4516 2384 of 4 1.20None
Eye6434 1204 of 4 1.67Up
Thoracicoabdominal ganglion3559 1434 of 4 0.90None
Salivary gland11151 7284 of 4 2.90Up
Crop5580 2554 of 4 1.50Up
Midgut5226 734 of 4 1.40Up
Tubule1168 534 of 4 0.30Down
Hindgut4775 894 of 4 1.20Up
Heart6731 2964 of 4 1.75Up
Fat body6578 7334 of 4 1.71Up
Ovary3453 454 of 4 0.90None
Testis409 154 of 4 0.10Down
Male accessory glands7984 1874 of 4 2.10Up
Virgin spermatheca5098 1894 of 4 1.33Up
Mated spermatheca5294 2524 of 4 1.38Up
Adult carcass5283 2274 of 4 1.40Up
Larval CNS2868 1704 of 4 0.75Down
Larval Salivary gland8346 3294 of 4 2.17Up
Larval midgut5009 794 of 4 1.30Up
Larval tubule3696 1814 of 4 1.00None
Larval hindgut4814 984 of 4 1.25Up
Larval fat body7341 8034 of 4 1.90Up
Larval trachea5874 3304 of 4 1.53Up
Larval carcass4989 4354 of 4 1.30None
S2 cells (growing)4727 294 of 4 1.23Up
Whole fly3842 1934 of 4

Looking for CG4759-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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